Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5601 203 6e-47 seq9360 174 3e-38 seq5512 136 7e-27 >seq5601 Length=566945 Score = 203 bits (224), Expect = 6e-47 Identities = 447/662 (68%), Gaps = 10/662 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGC 42343 ||| || ||| ||| |||||| ||||||||||| || | || | || ||||| || Sbjct 476963 ATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCT-TCATTTTGGACGGC 476905 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||| | |||||| | |||||| | ||| | ||||| || || | | |||| | Sbjct 476904 GGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG-TGGGAATCCCTAACGGCCGACGAGA 476846 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| ||| || | || ||||||||||||||||| ||||| || ||| || | Sbjct 476845 AACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGAATCGTCCTCGAAA 476786 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| ||| |||||||||||||||| || || || |||||||| ||||||||||| Sbjct 476785 ACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCT 476726 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 |||| || ||||| |||||| | ||||| || ||||| | || || | ||||||| Sbjct 476725 TCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACA 476666 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 | | ||| ||| | | | | || ||| | || ||| |||| ||| | Sbjct 476665 TAAAAAACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTG 476606 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 || ||||| || ||||| || || |||||||| | | || | || |||| |||| Sbjct 476605 CCAAAAAGGCCGATTGGGCCCTAAATTGGATCGA-CGGCTCG--GAGACATTCGCGGAGA 476549 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | ||| |||| ||| | ||| || || || ||||||||||| ||| | | || | Sbjct 476548 GACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGTAGTTTCTGCGCGATAT 476489 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 | ||| | || || | || ||||| || || |||||||||||||| || ||| Sbjct 476488 TTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCTAATCTCGC 476429 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | || || || || || | || || || || | |||| | ||| || ||| ||| Sbjct 476428 GAGATGAAGGACTCCACTGCGATTTCGCGTG---CTTGTTGTACAGCTTGCTGAGGAACA 476372 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 | ||||||| || || || | | |||||| |||||||| |||| ||||| Sbjct 476371 AATTAAGCGAGGAGCGCGTGAAGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAGT 476312 Query 42943 TC 42944 || Sbjct 476311 TC 476310 >seq9360 Length=2047533 Score = 174 bits (192), Expect = 3e-38 Identities = 357/523 (68%), Gaps = 7/523 (1%) Strand=Plus/Plus Query 42336 TGGACCGCCGAGGAGATTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||| |||| || | |||| | | ||| ||||||| | || | | Sbjct 1277502 TGGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCA-CTGGGAGGCCCTAACCGC 1277560 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 |||| ||| ||| ||| || | || ||||||||||| ||||| |||||||| || Sbjct 1277561 TGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGT 1277620 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514 | |||||||| ||| |||||||||| ||||| ||| | |||||||| ||| Sbjct 1277621 CCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTT 1277680 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 |||||||||||| || ||||| |||||| | ||||| || ||||| | || || | Sbjct 1277681 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 1277740 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || |||||| || ||| ||| ||| | || || | ||||| |||||| | || Sbjct 1277741 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 1277800 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 |||| || ||||| || |||||| | || |||||||| | | || | || || Sbjct 1277801 CTGCGTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGA-CGGCTCG--GAGACTTT 1277857 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTTCG 42753 || ||||| | | || ||| | ||| ||||| || |||||||| ||| | || | Sbjct 1277858 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 1277917 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 | | || || |||||||| || | || ||||| ||| | || ||||| ||||| Sbjct 1277918 -CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGT 1277976 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 | ||| | || ||||| || || | || || || ||||| Sbjct 1277977 TGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT 1278019 >seq5512 Length=582012 Score = 136 bits (150), Expect = 7e-27 Identities = 200/278 (72%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGC 42343 ||| || ||| || |||||| ||||||||||| || | || | || ||||| || Sbjct 61753 ATCCAGTACCCAGAAATCTGGGAAATGTACAAGAAAGCCGAAGCT-TCATTTTGGACGGC 61695 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||| |||||||| |||||| | ||| | ||||| || || | | |||| | Sbjct 61694 AGAGGAGCTTGACCTGTTGCAGGACATCCGCCAG-TGGGAATCCCTAACCGCCGACGAGA 61636 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| ||| | || | || ||||| ||||| ||||| ||||| || ||| || | Sbjct 61635 AACACTTCATCACACACGTGCTCGCCTTTTTCGCTGCCTCGGACGGAATCGTCCTCGAAA 61576 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| || |||| ||||||||||| || || ||| |||||||| ||||||| ||| Sbjct 61575 ACCTCGCAGCCAGATTCATGAAAGAAGTCCATGTCTTCGAGGCGCGTGCCTTCTACAGCT 61516 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 |||| || ||||| ||||||| ||||| || ||||| Sbjct 61515 TCCAAATCGCCATCAAGAACGTCCACTCCGAAATGTAC 61478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944163139760400