Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3221 105 5e-18 seq13803 87.8 1e-12 seq1028 84.2 2e-11 >seq3221 Length=646307 Score = 105 bits (116), Expect = 5e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||| |||||||||||| || ||||||||||||||||||||| | Sbjct 211616 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCG- 211674 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| | | || |||| ||||| || ||||| ||||||||||||||||| | Sbjct 211675 CAAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTG 211734 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCG 34077 | | | || |||||| |||||| ||| | | | | |||| || | ||| Sbjct 211735 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAG-AGCTCTCG 211793 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || ||||| || || ||||| || ||||| |||||| Sbjct 211794 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 211844 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 220176 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 220235 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| ||||| || ||||| |||||||||||| || | | ||| Sbjct 220236 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 220295 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| || || ||| | | | | |||| || | || ||||| || Sbjct 220296 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAG-AGCTCTCCACTTCGAGAGT 220354 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || ||||| |||||||| |||||||||||||| ||||| || Sbjct 220355 GATCGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCATATT 220396 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 261813 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 261872 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| ||||| || ||||| |||||||||||| || | | ||| Sbjct 261873 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 261932 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| || || ||| | | | | |||| || | || ||||| || Sbjct 261933 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCAG-AGCTCTCCACTTCGAGAGT 261991 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || ||||| |||||||| |||||||| ||||| ||||| || Sbjct 261992 GATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 262033 >seq13803 Length=1821802 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| |||||||| || || || ||||||||| || ||||| || ||||| |||| Sbjct 337622 AGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGC 337563 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || || ||||||||||| ||| || | | ||| Sbjct 337562 CCGTCTTCGAGCTGCTTGCCTGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATACCCTCC 337503 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| || || ||| | | | | || | || || || | |||| Sbjct 337502 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTT 337443 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || || ||||| |||||||| ||||| ||||| || Sbjct 337442 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 337402 >seq1028 Length=430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 140 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 81 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| ||||| || ||||| |||||||||||| || | | ||| Sbjct 80 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 21 Query 34030 TTGTCC 34035 |||||| Sbjct 20 TTGTCC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396990223361830