Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9360 107 2e-18 seq10828 95.1 1e-14 seq5601 95.1 1e-14 >seq9360 Length=2047533 Score = 107 bits (118), Expect = 2e-18 Identities = 369/568 (65%), Gaps = 13/568 (2%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||||||||| || || ||||| | || || ||||| | ||| ||||| | || Sbjct 1278002 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1277943 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || | ||| || ||||| ||||| || |||||||| || |||||||| || Sbjct 1277942 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1277883 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||||| | | | ||| || || | ||| ||| | ||| || | ||| Sbjct 1277882 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGA---GCCGTCGATCCAATTTAACGC 1277826 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 |||| || || || ||| || || || |||| ||| || | |||||| ||||| Sbjct 1277825 CCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCTT 1277766 Query 126298 TTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 126356 ||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 1277765 TTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA--T 1277709 Query 126357 TTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 126414 ||| ||||| || | ||||||| | ||||| ||| | ||| ||||| | Sbjct 1277708 GTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC--C 1277651 Query 126415 GGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 126472 | || || | || ||||| | || || || ||||| | || || || || Sbjct 1277650 GTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGGCG 1277591 Query 126473 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCC 126532 || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 1277590 AGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATCT 1277531 Query 126533 TTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCC 126592 | ||| ||||| || ||||| || |||||| | || || ||||| || | |||| Sbjct 1277530 TGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 1277471 Query 126593 CAAAGGTGGGGATACTTCAGGGGGAACA 126620 |||| || || |||| | ||||||| Sbjct 1277470 CAAATTTGTGGGTACTGAATCGGGAACA 1277443 >seq10828 Length=125459 Score = 95.1 bits (104), Expect = 1e-14 Identities = 267/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 17876 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 17817 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 10954 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 17816 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 17759 Query 10955 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCA 11014 || | || ||||| ||||||||||| | || || || || || || || ||| Sbjct 17758 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCGTTCTCTTTGGCC 17699 Query 11015 A-CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 ||| ||| | |||||||||||| ||||||||||| |||||||| || ||||| | Sbjct 17698 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 17640 Query 11074 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 17639 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 17581 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCAC 11192 | |||||||| || || || || ||||||| |||| ||| || | || ||| Sbjct 17580 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAA 17521 Query 11193 TTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 | || | | |||||| | |||||||| ||||| | ||| Sbjct 17520 TAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTTC 17478 >seq5601 Length=566945 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| || || || || ||||| || || ||||||||| || || ||||| | || Sbjct 476412 GTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCC 476471 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| |||||||| || ||||| || || |||||||||||| || || ||||| || Sbjct 476472 GCGCTTTTTCAACCAAAATATCGCGCAGAAACTACCCGAGAAGAATATCCCTTCCACGCA 476531 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAA 126204 || ||||| | || | ||| || || Sbjct 476532 AGCAAACGCTATCAGTCTCTCCGCGAA 476558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597242230888200