Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13803 127 2e-24 seq3221 114 1e-20 seq13804 113 5e-20 seq9249 109 6e-19 seq6246 104 3e-17 seq1669 104 3e-17 seq7271 102 9e-17 seq5889 100 3e-16 seq8940 82.4 8e-11 >seq13803 Length=1821802 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || |||||||| || |||| || ||| |||| || Sbjct 337614 CACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTC 337555 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | ||| | | |||||||||| Sbjct 337554 GAGCTGCTTGCCTGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTG 337495 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | |||||| || ||||| || | ||| ||||| | Sbjct 337494 GATCTTCGCCTTGA-CGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCT 337436 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | |||||||| || || || ||||| ||||| || Sbjct 337435 TACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 337402 >seq3221 Length=646307 Score = 114 bits (126), Expect = 1e-20 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| ||| || |||||||| |||||||| |||| ||| || |||| || || || Sbjct 211868 ATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTG 211927 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || || || ||||| ||||||||||| | || | | |||||||||| ||| || Sbjct 211928 CTTCCCTGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTT 211987 Query 42125 TTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGC 42180 |||| ||| | | | ||||| |||| ||||| |||| ||||| || |||| Sbjct 211988 GGCCTTGA-CGTTGTCGATTGTGTCGGAGCTC---TCCACTTCGAGGGTGATTGTCTTGC 212043 Query 42181 CCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 | || || || || ||||| || ||||| ||||| Sbjct 212044 CGGTGAGGGTTTTCACAAATATCTGCATCTTCAC 212077 Score = 113 bits (124), Expect = 5e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||||||||| ||| | || |||||| ||||| |||||||| || Sbjct 211616 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC 211675 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| | || || |||||||| ||||| || || || |||||||| || | ||| Sbjct 211676 AAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGG 211735 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||||||| |||| ||| | | | ||||| |||| | Sbjct 211736 GATCCCTTCCTTGTCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---T 211791 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || | ||||| || || ||||| || || || || ||||| |||||| Sbjct 211792 CGACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 211844 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||||| || || |||| || || ||||| ||||| || Sbjct 290845 CTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAA 290904 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | ||||||||| | || | | |||||||| | ||| | || | |||| Sbjct 290905 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGT-CTTGAATCTTCGCCTTGACGT 290963 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| || || |||| || || || || || ||||| || | Sbjct 290964 TATCGATCGTGTCTGAGCTC---TCAACCTCGAGGGTTATCGTCTTCCCGGTTAGGGTTT 291020 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 291021 TGACAAAGATCTGCAT 291036 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || || |||||||| || || || |||| ||||||||||| |||||||| Sbjct 219519 CTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTCCCAGCGAA 219578 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | |||||| || | ||| | | ||||| ||| ||| | |||| |||| Sbjct 219579 GATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTATCC-TGAATCTTTGCCTTGACAT 219637 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | || || || || || || | |||| Sbjct 219638 TATCAATTGTATCAGAACTC---TCCACCTCCAGAGTAATAGTCTTCCCAGTCAAAGTCT 219694 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| |||||||| Sbjct 219695 TGACAAAAATTTGCAT 219710 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| ||| || ||||| || |||||||| |||| ||||| |||| || || || Sbjct 261599 ATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGTTG 261658 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || ||||| || || | ||||||||||| || | | ||||||||| ||| || Sbjct 261659 CTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTT 261718 Query 42125 TTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCC 42181 || | | | | |||||| |||| || || |||| || || || || || Sbjct 261719 GGCCTTCACGTTATCGATCGTGTCGGAGCTC---TCGACCTCGAGGGTAATCGTCTTCCC 261775 Query 42182 CGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || ||||| ||||| Sbjct 261776 GGTCAGGGTTTTGACGAAGATCTGCAT 261802 >seq13804 Length=830140 Score = 113 bits (124), Expect = 5e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| |||| || ||| |||| || |||||||| || ||||| Sbjct 395777 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 395718 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | ||||||||| ||| || |||| ||| Sbjct 395717 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 395659 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| ||||| |||| |||||||| ||||| || | || | Sbjct 395658 TGTCGATCGTGTCGGAGCTC---TCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTT 395602 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 395601 TCACAAAGATCTGCAT 395586 Score = 105 bits (116), Expect = 7e-18 Identities = 144/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||| || |||||||| | || || |||||||| || ||||| Sbjct 396233 CTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAA 396174 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | ||| | | ||| |||||| ||| || || | ||| Sbjct 396173 GATCAACCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTCA-CGT 396115 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| ||||| || | ||||| || || || || | ||||| Sbjct 396114 TGTCGATCGTGTCGGAGCTC---TCCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTCT 396058 Query 42193 TTACAAAGATTTGCATT 42209 | || ||||| |||||| Sbjct 396057 TGACGAAGATCTGCATT 396041 >seq9249 Length=1184332 Score = 109 bits (120), Expect = 6e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| |||| || ||| |||| || |||||||| |||||||| Sbjct 868023 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCAGCGAA 867964 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | ||||| ||| ||| || |||| | Sbjct 867963 GATCAGCCGCTGCTGGTCCGATGGAATCCCTTCCTTATCCTGGATCTTAGCCTTGACATT 867904 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | |||||| |||| ||||| |||| |||||||| ||||| || | || || Sbjct 867903 GTCGATCGTGTCGGAGCTC---TCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTT 867847 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 867846 CACAAAGATCTGCAT 867832 >seq6246 Length=1554407 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || || || || | |||| || |||||||| || ||||| Sbjct 817887 CTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 817828 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | | |||||||||| ||| || |||| | Sbjct 817827 GATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 817768 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | || ||||| || |||||||| || || || Sbjct 817767 GTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTTTTCAC 817708 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 817707 GAAGATCTGCAT 817696 >seq1669 Length=710980 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || || || || | |||| || |||||||| || ||||| Sbjct 59026 CTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 59085 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | | |||||||||| ||| || |||| | Sbjct 59086 GATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 59145 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | || ||||| || |||||||| || || || Sbjct 59146 GTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTTTTCAC 59205 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 59206 GAAGATCTGCAT 59217 >seq7271 Length=339586 Score = 102 bits (112), Expect = 9e-17 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||||||||| |||| ||||| ||||| |||||||| || || |||| | | || Sbjct 99516 CAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCAAGGGTCCTCCCATC 99457 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| || || || || | | ||||||||| | ||| | || |||||| || Sbjct 99456 TTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGAATGCCCTCCTTATC 99397 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGAT 42172 ||| || || | | | | |||||| ||| || || || | ||||| Sbjct 99396 TTGGATCTTGGCCTTCACATTATCAATCGTGTC---CGAACTCTCTACCTCCAGAGTGAT 99340 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || ||||| ||||| |||||||| Sbjct 99339 TGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 99304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | ||||| |||| || |||||| || || || ||||| || Sbjct 94749 CCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCG 94690 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || ||||| |||||||| || || || | |||||| || | ||| Sbjct 94689 AGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGA 94630 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| ||| || ||||| | | | || ||| ||| || Sbjct 94629 ATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACC 94570 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || |||||||| || || || ||||| |||||||||||||| Sbjct 94569 TCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCAT 94523 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| ||||||||||| || || || |||| | || || Sbjct 99056 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 98997 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||||||||| || || || | ||||||||| | || | || |||||||| || Sbjct 98996 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT-TG 98938 Query 42120 ATTTTTTGTTTGAGCGTCGCCACC-GTGTCG---CTCGATTCCACATCGACCGTGATGGT 42175 | | || | || | | | | || || || ||| || || || | || ||||| Sbjct 98937 AATCTTAGCTTTAACATTGTCAATAGTATCCGAACTC---TCAACTTCTAAGGTAATGGT 98881 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || ||||| |||||||||||||| Sbjct 98880 CTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 98848 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||| ||| | |||| || | |||| |||||| ||||| || || || || Sbjct 98390 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 98331 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || || || ||||| || || || | |||||||| | ||| Sbjct 98330 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 98271 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| | || | ||||| | | | |||||| |||||| Sbjct 98270 ATCCCTTCCTTGTCC-TGAATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCAC 98212 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || || |||||||||||||| ||||| Sbjct 98211 CTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 98164 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || |||||||| || || || | || || ||||| ||||| || || Sbjct 55642 CTCCTTCTGGATGTTATAATCAGCAAGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAA 55583 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | ||| | | ||||||||| ||| | || | || | | Sbjct 55582 GATAAGCCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATCTTGGCTTTCACAT 55524 Query 42137 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | || | ||||| |||||| || | || || || ||||| || || ||||||| Sbjct 55523 TGTCAATGGTGTCGGAGCTTTCCACCTCAAGAGTAATTGTCTTGCCAGTGAGGGTCTTTA 55464 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 55463 CAAAGATCTGCAT 55451 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||||||| | || ||||| || || ||||| || || Sbjct 55905 CCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCA 55846 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || ||||| || ||||| || || ||||| | |||||||| | ||| Sbjct 55845 AGTGTGCGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGG 55786 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| ||| ||| |||| | ||||| | | | |||||| |||||| Sbjct 55785 ATCCCTTCCTTATCC-TGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCAC 55727 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || || |||||||||||||| ||||| Sbjct 55726 CTCCAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 55679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | |||||||| | || ||||| || || ||||| || || Sbjct 94978 ACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 94919 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || || || ||||| || ||||| | |||||||| | ||| Sbjct 94918 AAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGG 94859 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA---TT 42156 | | ||||| ||| ||| |||| | ||||| | | | ||||| ||| || Sbjct 94858 GATCCCTTCCTTATCC-TGAATTTTGGCTTTGACATTGTCAATGGTGTC---CGAGCTTT 94803 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | || ||||| || || || || |||||||||||||||||||| Sbjct 94802 CCACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 94751 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || || || || ||||| ||||| || | || || Sbjct 98144 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTCG 98085 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| || ||||| || ||||| | |||||||| | ||| | | ||||| ||| | Sbjct 98084 AGCTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 98025 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || || ||| | | | | ||||| ||| ||| || || | || ||||| Sbjct 98024 ATCTTGGCTTTTACATTATCAATGGTGTCAGAGCT---TTCGACCTCAAGGGTTATGGTC 97968 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || ||||| |||||||||||||| Sbjct 97967 TTGCCGGTGAGAGTCTTCACAAAGATTTGCAT 97936 >seq5889 Length=513596 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||||||||| ||| | || ||||| ||||| |||||||| || Sbjct 197800 CCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCG 197741 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || |||||||| |||||||| || | ||||||||||| | || Sbjct 197740 AGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGA 197681 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| || |||| ||| | | | |||||| |||| || Sbjct 197680 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCGGAGCTC---TC 197625 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| || || || || |||||||| || || || || || ||||| Sbjct 197624 GACCTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 197574 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| ||||||||||| |||| || || |||| || ||||| || || ||||| Sbjct 196852 TCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 196793 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | | |||||||| ||| || |||| ||| Sbjct 196792 ATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 196734 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||||| |||| || || |||| || ||||| ||||| ||||| || || Sbjct 196733 GTCGATGGTGTCGGAGCTC---TCGACTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTT 196677 Query 42194 TACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 196676 CACGAAGATCTGCAT 196662 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||||||||||| || || |||| || || ||||| || ||||| Sbjct 197080 TCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCTGCGAAG 197021 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 197020 ATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 196962 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | |||||| |||| || || |||| || ||||| ||||| ||||| || || Sbjct 196961 GTCGATCGTGTCGGAGCTC---TCAACTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTT 196905 Query 42194 TACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 196904 CACGAAGATCTGCAT 196890 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||||||||||| || || |||| || || ||||| || ||||| Sbjct 197536 TCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCTGCGAAG 197477 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 197476 ATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 197418 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | |||||| |||| || || |||| || ||||| || |||||||| || || Sbjct 197417 GTCGATCGTGTCGGAGCTC---TCAACTTCGAGAGTAATGGTCTTTCCCGTTAGGGTTTT 197361 Query 42194 TACAAAGATTTGCAT 42208 || || || ||||| Sbjct 197360 GACGAATATCTGCAT 197346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 197993 CTCCTTCTGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAA 197934 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 ||||| | |||||| || | ||| | | ||||||||| Sbjct 197933 GATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCC 197894 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||||||||||| || || |||| || || ||||| || ||||| Sbjct 197308 TCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCTGCGAAG 197249 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 197248 ATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 197190 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | |||||| |||| || || |||| || ||||| || |||||||| || || Sbjct 197189 GTCGATCGTGTCGGAGCTC---TCAACTTCGAGAGTAATGGTCTTTCCCGTTAGGGTTTT 197133 Query 42194 TACAAAGATTTGCAT 42208 || || || ||||| Sbjct 197132 GACGAATATCTGCAT 197118 >seq8940 Length=216051 Score = 82.4 bits (90), Expect = 8e-11 Identities = 165/238 (69%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 41977 ATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 42036 |||| || || |||| ||| | || || || | ||| |||||||||||| ||||||| Sbjct 153057 ATCG-CCACCACTTAGACGGAGGACAAAGTGGAGAGTGGACTCCTTTTGAATGTTGTAAT 153115 Query 42037 CAGCCAGAGTCCGCTCGTCATC-TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 42095 | || |||||| |||| || | ||||| | ||||| ||||| | | ||||| | Sbjct 153116 CGGCGCGAGTCCAGCCGTCCTCAAAATTGCTTGCGGGCGAAGATGAGCCTCCGCTGGCCC 153175 Query 42096 GCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCT 42151 | || | | |||||||||| ||| | || || | ||| | | | |||||| ||| Sbjct 153176 GGCGGAATCCCCTCCTTGTCC-TGAATCTTCGTCTTCACGTTGTCGATCGTGTCGGAGCT 153234 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | ||||| || ||||||||||| || || |||||| || ||||| || ||| Sbjct 153235 C---TCCACCTCCTGAGTGATGGTTTTCCCGGTCGACGTCTTGACGAAGATCTGAATT 153289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543111524763600