Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7271 114 1e-20 seq6246 104 2e-17 seq1669 104 2e-17 seq13804 102 8e-17 seq13803 102 8e-17 seq3221 98.7 1e-15 seq5889 96.9 3e-15 seq9249 93.3 4e-14 >seq7271 Length=339586 Score = 114 bits (126), Expect = 1e-20 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 98600 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 98541 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||||||||||| | |||| || | || ||||| || || || ||||| ||||| || Sbjct 98540 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TG 98482 Query 138526 ATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | ||| | |||| | | |||||||| ||| || || | || | |||| Sbjct 98481 AATTTTGGCTTTGACATTGT-CAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTT 98423 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||||| ||||| ||||| |||||||| Sbjct 98422 TACCAGTCAGGGTTTTCACAAATATCTGCAT 98392 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || ||||| | | |||||||||| || ||||||||||| Sbjct 56134 GCCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 56075 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || |||||||| |||| | |||||| | |||||| || || || Sbjct 56074 AAGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGG 56015 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| || || | |||| || | ||||| | || | Sbjct 56014 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATCGTGTCAGAGCTTTCAA 55956 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || ||||||||||| ||||| ||||||||||||||| Sbjct 55955 CCTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCATG 55906 Score = 100 bits (110), Expect = 3e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 55887 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 55828 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||||||||||| | |||| || | || ||||| || || || ||||| || || || Sbjct 55827 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 55769 Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | ||| |||| || | |||||||| |||||||| | || | || | Sbjct 55768 AATTTTGGCTTTGACATTG-TCAATGGTGTCGGAGCTTTCCACCTCCAGGGTGATAGTCT 55710 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || || |||||||| |||||||| Sbjct 55709 TTCCAGTGAGGGTCTTTACAAAGATCTGCAT 55679 Score = 100 bits (110), Expect = 3e-16 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | || || || | | |||||||||| || ||||||||||| ||| Sbjct 95205 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT 95146 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || |||||||| || | | |||| | | ||| || || ||||| Sbjct 95145 -AGAGTACGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGG 95087 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | ||| |||| || | ||||| | || Sbjct 95086 GATGCCCTCCTTGTC-CTGAATCTTAGCCTTAACATTG-TCGATTGTGTCAGAGCTTTCA 95029 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | |||||||||||||| ||||| |||||||||||||| Sbjct 95028 ACCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 94979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 94959 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 94900 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| || | | |||| || | || ||||| || || || ||||| || || || Sbjct 94899 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 94841 Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | ||| |||| || | |||||| | |||||||| | || | || | Sbjct 94840 AATTTTGGCTTTGACATTG-TCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCT 94782 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | ||||| || || |||||||| || |||||| Sbjct 94781 TTCCAGTGAGGGTCTTTACAAAGATTTGCATG 94750 >seq6246 Length=1554407 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| |||||||||||| | || | ||||||||| || || |||| Sbjct 817891 TTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGG 817832 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 817831 CGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 817772 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||||| | | |||||| | || || ||||| | || | || || || || || ||| Sbjct 817771 CATTGT-CGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTT 817713 Query 138598 TTTACAAAAATCTGCATGGCT 138618 || || || |||||||||||| Sbjct 817712 TTCACGAAGATCTGCATGGCT 817692 >seq1669 Length=710980 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| |||||||||||| | || | ||||||||| || || |||| Sbjct 59022 TTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGG 59081 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 59082 CGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 59141 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | || || ||||| | || | || || || || || ||| Sbjct 59142 CATTG-TCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTT 59200 Query 138598 TTTACAAAAATCTGCATGGCT 138618 || || || |||||||||||| Sbjct 59201 TTCACGAAGATCTGCATGGCT 59221 >seq13804 Length=830140 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || || || ||| ||||||||| || || |||| Sbjct 395779 GACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCG 395720 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 395719 AAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACG 395660 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||| || | || || || |||| |||||| Sbjct 395659 TTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTC 395600 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 395599 ACAAAGATCTGCAT 395586 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||| ||| | ||| || |||||||| || || |||| Sbjct 396235 GACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCG 396176 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| |||||||| || || || |||||||| ||| || || | Sbjct 396175 AAGATCAACCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTCACG 396116 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||| | || | ||| || || |||| || || Sbjct 396115 TTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTCTTG 396056 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 396055 ACGAAGATCTGCAT 396042 >seq13803 Length=1821802 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||||||| || || ||| ||| ||||| || || || | Sbjct 337598 GACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTCGAGCTGCTTGCCTGCG 337539 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 337538 AAGATGAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACG 337479 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||| | ||| | || ||||| || || ||||| Sbjct 337478 TTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTTTTC 337419 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 337418 ACGAAGATCTGCAT 337405 >seq3221 Length=646307 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || |||||||||||||| ||| || ||| || ||| |||||||| || || | | Sbjct 211878 GATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCTGCA 211937 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 211938 AAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 211997 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| |||| || | || || || || || ||||| Sbjct 211998 TTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTC 212057 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 212058 ACAAATATCTGCAT 212071 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | || | ||| | | | ||||||||||||||||| || || ||| Sbjct 211389 CCACCACGAAGACGGAGGACAAGATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 211448 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||||| || || || || | | |||| || | ||| || || || || Sbjct 211449 -AAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGG 211507 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| || || ||| | || | || |||| || | ||| || | |||| Sbjct 211508 AATCCCTTCCTTATC-CTGAATCTTAGCCTTGACATTG-TCAATGGTATCAGAACTCTCC 211565 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | ||||| ||||| ||||| || || ||||||||||| Sbjct 211566 ACCTCCAGGGTAATTGTTTTCCCAGTAAGAGTCTTGACGAAAATCTGCAT 211615 >seq5889 Length=513596 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| || ||||| ||| || || || ||| ||||| ||||| |||| Sbjct 196855 GATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCG 196796 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| || ||||| ||||| ||| || || | Sbjct 196795 AAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 196736 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||| || |||| || | || || || || || ||||| Sbjct 196735 TTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTC 196676 Query 138601 ACAAAAATCTGCATGGCTTATAA 138623 || || |||||||| | ||| || Sbjct 196675 ACGAAGATCTGCATCGTTTAAAA 196653 >seq9249 Length=1184332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || || || ||| ||||||||| || || || | Sbjct 868025 GACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCAGCG 867966 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||||| || || ||||| || || ||| || || | | Sbjct 867965 AAGATCAGCCGCTGCTGGTCCGATGGAATCCCTTCCTTATCCTGGATCTTAGCCTTGACA 867906 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||||||| ||||||||||| || | || || || |||| |||||| Sbjct 867905 TTGT-CGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTT 867847 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 867846 CACAAAGATCTGCAT 867832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496169878078800