Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7271 100 2e-16 seq3221 100 2e-16 seq5889 93.3 3e-14 seq1028 84.2 2e-11 >seq7271 Length=339586 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || || ||||| ||| ||| | || | ||||| Sbjct 99056 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 98997 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | | ||| ||||| || || ||||||||||| | Sbjct 98996 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 98937 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || |||||||| | | || || |||||||||||||| || Sbjct 98936 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 98877 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || ||||| ||||||||| Sbjct 98876 CCAGTAAGAGTCTTAACAAAGATTTGCATA 98847 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || || ||||| || || || || |||||||| || ||| ||| | | | ||||| Sbjct 95187 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT-AGAGTACGGCCATCTTC 95129 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||||||||| | ||||| | ||| || ||| || || || |||||||| Sbjct 95128 AAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTG 95069 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || || || || |||| || || || || || ||||| Sbjct 95068 AATCTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTT 95009 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| ||||| |||||||| |||||| Sbjct 95008 ACCAGTCAGGGTTTTCACAAAAATCTGCATA 94978 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || |||||||| || || | | | || ||| Sbjct 98600 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 98541 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || || | || | | || ||||| ||| || ||||||||||| | Sbjct 98540 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 98481 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || || || ||| | || || || ||||| || |||||| Sbjct 98480 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTTTA 98421 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| ||||| || ||||| Sbjct 98420 CCAGTCAGGGTTTTCACAAATATCTGCAT 98392 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| ||| || || ||||| || || || || || || ||||||||||| Sbjct 99530 CCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCA 99471 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | ||||| | || ||||| || | ||||| | ||| ||||| |||| Sbjct 99470 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 99411 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || ||| || ||| | || || || || | | ||||| Sbjct 99410 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 99351 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || ||||| || || ||||| || |||||||||||||| Sbjct 99350 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 99304 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || || || ||||| |||||| ||| | | | | || || Sbjct 94732 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTC 94673 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | || | | ||| || || |||||| ||||||||||| Sbjct 94672 AAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTG 94613 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || ||| ||| | || || |||||| |||| || || | ||| |||||||| Sbjct 94612 GATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTT 94553 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 94552 TCCGGTGAGAGTCTTCACAAAGATTTGCAT 94523 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || |||||||| || || | | | || || Sbjct 94959 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 94900 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||||||||| | || | | || ||||| ||| || |||||||| || | Sbjct 94899 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 94840 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || || || || |||| || || | ||||||||| || Sbjct 94839 ATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTT 94780 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| |||||||| Sbjct 94779 CCAGTGAGGGTCTTTACAAAGATTTGCAT 94751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || || || |||||||| || || | | | |||||| Sbjct 98828 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCTTCT 98769 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | |||| | |||||| || ||| || || |||||||| Sbjct 98768 AGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 98709 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || || || |||| || || || || || || ||| Sbjct 98708 ATCTTGGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 98649 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| |||||||| ||||| Sbjct 98648 CCAGTCAGGGTTTTCACAAAAATCTGCAT 98620 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || |||||||| || || | | | || ||| Sbjct 55887 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 55828 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || || | || | | || ||||| ||| || |||||||| || | Sbjct 55827 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 55768 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || || || ||| |||| || || | ||| || || || Sbjct 55767 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCCAGGGTGATAGTCTTT 55708 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||| || |||||| Sbjct 55707 CCAGTGAGGGTCTTTACAAAGATCTGCATA 55678 >seq3221 Length=646307 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || || || ||||| ||||| ||| | || | || || Sbjct 290371 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTC 290430 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||||||||| | ||||||||||| || || ||||||||||||||| || Sbjct 290431 AAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTATCTTG 290490 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | || || || || | || || || || ||||| ||||| Sbjct 290491 GATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATTGTTTT 290550 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| || ||||| Sbjct 290551 CCCAGTAAGGGTCTTAACAAATATCTGCAT 290580 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | ||| | ||| | ||| || |||||||| |||||||||||| Sbjct 261574 TGCCACCACGGAGCCTGAGAACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGG 261633 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | ||||||| | ||| || || ||| | |||| | ||| |||||| | Sbjct 261634 CCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 261693 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || || ||| | || | Sbjct 261694 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGA 261753 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||| || || || ||||| ||||| || || || ||||| Sbjct 261754 CCTCGAGGGTAATCGTCTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 261802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || ||||| ||||| ||||| || | | |||| |||| || Sbjct 219507 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 219566 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || |||||| | || | | ||| || || |||||| |||||||| || ||| || Sbjct 219567 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTATCCTGAATCTT 219626 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| | || || ||||| | | || || || | ||||| || || || | Sbjct 219627 TGCCTTG-ACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAG 219685 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 ||| ||| || |||||||||||||| Sbjct 219686 TCAAAGTCTTGACAAAAATTTGCAT 219710 >seq5889 Length=513596 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | || | || || | |||||| || || || || || ||||||||||| Sbjct 197802 TGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG 197743 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || | || || | || ||||||||| | ||||||||||| ||||| | Sbjct 197742 CGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCG 197683 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| || ||| || || | || || || ||| | || | Sbjct 197682 GAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGA 197623 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||| || || || || || ||||| || || || ||||| Sbjct 197622 CCTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 197574 >seq1028 Length=430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | ||| | ||| || |||||||| |||||||||||| Sbjct 379 TGCCACCACGGAGCCTGAGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGG 320 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | ||||||| | ||| || || ||| | |||| | ||| |||||| | Sbjct 319 CCAAGGTGCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 260 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || || ||| | || | Sbjct 259 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGA 200 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||| || || || ||||| ||||| || || || ||||| Sbjct 199 CCTCGAGGGTAATCGTCTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357327034510775