Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9360 105 8e-18 seq7036 82.4 9e-11 >seq9360 Length=2047533 Score = 105 bits (116), Expect = 8e-18 Identities = 372/570 (65%), Gaps = 17/570 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 1278002 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1277943 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 1277942 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1277883 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709 || ||||| | || | ||| || |||| | | | || | ||| || | || Sbjct 1277882 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 1277827 Query 127710 CCCACTGTGCCTTT-TTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 127768 ||||| ||| |||| || ||| || || || |||| ||| || | |||||| ||| Sbjct 1277826 CCCAC-GTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 1277768 Query 127769 TTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 127827 ||||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 1277767 TTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA- 1277710 Query 127828 CATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 127885 ||| ||||| || | ||||||| | ||||| ||| | ||| ||||| Sbjct 1277709 -TGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC- 1277652 Query 127886 TCGGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 127943 || || || | || ||||| | || || || ||||| | || || || | Sbjct 1277651 -CGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGG 1277593 Query 127944 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGAT 128003 | || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 1277592 CGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGAT 1277533 Query 128004 CCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTT 128063 | | || ||||| || ||||| || |||||| | || || ||||| || | || Sbjct 1277532 CTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 1277473 Query 128064 CCCAGAGGTGGGGATACTTCAGGGGGAACA 128093 |||| | || || |||| | ||||||| Sbjct 1277472 CCCAAATTTGTGGGTACTGAATCGGGAACA 1277443 >seq7036 Length=357795 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 115961 |||||||||| || ||||||||||||||||||||||| |||||| | |||| || || Sbjct 204172 TAGATGTTGGAAGTATATGGCTCAAAGCACTCATTGTT-TCCAAGAATCTGGCTGGTTGA 204230 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAG 115988 ||| || ||||| ||||||| ||||| Sbjct 204231 GGCAGTTGGCATTGGTGCCACAAGAAG 204257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613392819251400