Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5601 141 1e-28 seq9360 140 5e-28 >seq5601 Length=566945 Score = 141 bits (156), Expect = 1e-28 Identities = 542/843 (64%), Gaps = 31/843 (4%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || || ||||| || | || || || | ||||| | | || || | Sbjct 476126 TCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAACTCCATCCAATCAAACGGAT 476185 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||||| || |||| | ||||| || ||| |||||| ||||||||||| | Sbjct 476186 TCGTCACGCCGTACACCTTCCCGCACCCGAGCGCACCCAACAACCTATCTGCCACAAACT 476245 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | ||||| || |||| | | | ||| ||||||| || | |||| ||||| || Sbjct 476246 CTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAATGCGCACGGC-AGCGCGTCG 476304 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| |||||| |||| ||||| ||||| || |||| ||| | || || || | Sbjct 476305 CACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCTTCACGCGCTCCTC- 476363 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAA--------ACAGGAGGCACGCAAAGTCGCAGT 159938 |||| ||| || |||| | ||| | |||||| || ||||||| Sbjct 476364 ----GCTT------AATTTGTTCCTCAGCAAGCTGTACAACAAGCACGCGAAATCGCAGT 476413 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | ||||| || || || ||||| | |||||| || | | | ||||||||||| | ||| | Sbjct 476414 GGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCCGC 476473 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCC 160057 || ||| | |||||| || | |||| ||| ||| || || ||||| |||||| Sbjct 476474 GCTTTTTCAACCAAAATATCG-CGCAGAAACTACCCGAGAAGAATATCCCTTCCACGCAA 476532 Query 160058 GCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCC 160117 |||||||| | || ||||| | | | | | | | | | | |||| || |||| Sbjct 476533 GCAAACGCTATCAGTCTCTCCGCGA---ATGTCTCCGAGCCGTCGATCCAATTTAGGGCC 476589 Query 160118 CATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGC 160177 || || ||||| || || | |||||||| || | |||| ||| || | | || Sbjct 476590 CAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATAAGCGGCTCTTT 476649 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 || | | || || || | | || |||||||||||| | ||| | || Sbjct 476650 TCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTC 476709 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGT 160296 |||||||| || || ||| |||||| ||||| | || || || || || | | Sbjct 476710 TCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCT-CGGAGACTTGGACTTCTTTCAT 476768 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | ||||| | ||| || ||||| || | ||| Sbjct 476769 GAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCCGAGGCGGCGAAGAAGGCGAGCAC 476828 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| | |||||| ||| ||||||| | || |||||| || | ||| || Sbjct 476829 GTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAG---GGATTCCCACTGGCGGATGTCCTG 476885 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 | || || ||||| ||||| ||||| | ||| | || | |||||||| |||| Sbjct 476886 CGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCA 476945 Query 160477 GAT 160479 ||| Sbjct 476946 GAT 476948 >seq9360 Length=2047533 Score = 140 bits (154), Expect = 5e-28 Identities = 459/708 (65%), Gaps = 23/708 (3%) Strand=Plus/Minus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||| ||| || || || ||||| || ||||| || |||| || | || ||||||| Sbjct 1278192 CCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCA 1278133 Query 159804 GCAGC-CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTC 159862 || | | |||| ||||| || ||| |||||| |||| ||||| ||||| || || Sbjct 1278132 CCAACGCGCACGGC-AGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTC 1278074 Query 159863 ACAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGA-- 159920 || | | | || | || | | |||| ||| || ||||| | | Sbjct 1278073 ACTAACGCCTTCACTCTCTCCTCGCTTAGCTT--------TGTCCTCAATAAACTGTACA 1278022 Query 159921 ---GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGA 159977 ||||||| || |||||||| || ||||| || || ||||| |||||||| || | Sbjct 1278021 ACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATG 1277962 Query 159978 TGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAA 160037 | | |||||||| | ||| ||| |||||||||||| || || |||||| | || | Sbjct 1277961 TTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAG 1277903 Query 160038 AA-AAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTG 160096 || || |||||||||||| |||||||| | | ||||| | ||| | | | | Sbjct 1277902 AAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAA---GTCTCCGAG 1277846 Query 160097 TCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACG 160156 | | | |||| || ||||| || |||||||||| ||| || | ||||| | Sbjct 1277845 CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATG 1277786 Query 160157 GCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAG 160216 |||| ||| | | || || || | || ||||| ||| | | ||| |||| Sbjct 1277785 GCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAG 1277726 Query 160217 TACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC 160276 |||||||| | ||| | || |||||||| || || ||| |||||| |||||| Sbjct 1277725 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCG 1277666 Query 160277 AGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCG 160336 ||| |||||| |||||||| | || || | || | ||||||| | Sbjct 1277665 GCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 1277606 Query 160337 GCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTT 160396 || || ||||| || | |||||| | || ||| || ||||||| | | || | Sbjct 1277605 GCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC--- 1277549 Query 160397 TCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAA 160444 |||||||| | ||||| | | |||||| || || ||| ||||| Sbjct 1277548 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAA 1277501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795006953252400