Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq10828 147 3e-30 seq13915 87.8 2e-12 seq5989 84.2 3e-11 seq5924 82.4 9e-11 >seq10828 Length=125459 Score = 147 bits (162), Expect = 3e-30 Identities = 317/466 (68%), Gaps = 20/466 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || | | || ||||| || || |||| ||||| || | ||||| Sbjct 17894 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 17835 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| ||||||||||||||||||| || || || | |||||||||| || | | Sbjct 17834 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 17777 Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 17776 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 17717 Query 16095 G----GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | ||| ||| || | ||| ||| ||||| || || | || || ||||| Sbjct 17716 GGAGCGTTCTCTTTGGC---CTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACC 17661 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | | | | | || | || || || ||| | ||||| Sbjct 17660 AACAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCAC 17602 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||||| || ||| ||||||||||| || || ||||| ||| |||| || ||| Sbjct 17601 CAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACAC 17542 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 | |||||| || ||| | || |||||||||| | |||||| || ||||| Sbjct 17541 CCTTTGGAATACGAGCTCCAATAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC-- 17484 Query 16330 TCTCTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||||| || || | ||| || | |||| || ||||||| Sbjct 17483 -CACTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 17439 >seq13915 Length=807303 Score = 87.8 bits (96), Expect = 2e-12 Identities = 248/375 (66%), Gaps = 12/375 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||||||||| |||||||| || || | |||||| || || Sbjct 460025 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 459968 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 459967 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 459908 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| |||| | || ||||| | ||||| ||| || | ||||| || Sbjct 459907 CACGGT--GCCTTCGATTTGGCCTTCTCAAACAAATCCC--TCACTCTGGATGCGCCAAC 459852 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||||| ||| ||||| | || ||| | |||| || || || || | ||| Sbjct 459851 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACATGAGAAAAATGGCACGCCGGCTTC 459792 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 || |||| || | || | | ||| || || || ||||| || | | | Sbjct 459791 TCCAGCAACTGCCCTAGCCAATAAAGTTTTCCCAGTTCCTGGTGGCCCAACTAATAAACA 459732 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||||||||| ||||| | ||| | || || | ||||||||||| || Sbjct 459731 CCCTTTTGGAATCTTAGCGCCCAAAGCTGTGTACTTATCGGGGTTTTTAAGAAAATCAAC 459672 Query 16328 AATCTCTTCCAATTC 16342 | ||||| ||||| Sbjct 459671 TACCTCTTGTAATTC 459657 Score = 86.0 bits (94), Expect = 8e-12 Identities = 151/215 (70%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||| ||| || ||||||||||| |||||||| || || | |||||| || || Sbjct 137021 AAAGCCATTCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 136962 Query 16034 CATACCACCAGCACTGCGTTG-CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || || || | | || || ||||| |||||||| |||||||| | || || | Sbjct 136961 TCTAAGCCCTGCTCCTCTCTGTCTCCCCCACAGCATCAATTTCATCAATAAGCACAATAC 136902 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 ||||| |||| | || ||||| | ||||| ||| || | ||||||||| Sbjct 136901 ATGGT--GCCTTCGGTTTGGCCTTCTCAAACAAATCCC--TCACTCTGGATGCGCCCACA 136846 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 |||||||||| ||| ||||| | || ||| | ||| Sbjct 136845 CCAACAAACAACTCAACAAACTCTGGGGCAGCACA 136811 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/203 (70%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||| ||| || ||||||||||| |||||||| || || | |||||| || || Sbjct 141628 AAAGCCATTCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 141569 Query 16034 CATACCACCAGCACTGCGTTG-CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || || || | | || || ||||| |||||||| |||||||| | || || | Sbjct 141568 TCTAAGCCCTGCTCCTCTCTGTCTCCCCCACAGCATCAATTTCATCAATAAGCACAATAC 141509 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 ||||| |||| | || ||||| | ||||| ||| || | ||||||||| Sbjct 141508 ATGGT--GCCTTCGGTTTGGCCTTCTCAAACAAATCCC--TCACTCTGGATGCGCCCACA 141453 Query 16149 CCAACAAACATCTCCACAAAGTT 16171 |||||||||| ||| ||||| || Sbjct 141452 CCAACAAACAACTCAACAAACTT 141430 >seq5989 Length=495927 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/223 (70%), Gaps = 11/223 (5%) Strand=Plus/Plus Query 111537 GACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC-AAAG----ACTGG 111591 |||| || ||| ||||| |||| ||||| |||| ||||||| |||| | || Sbjct 134861 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 134920 Query 111592 ATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATG 111651 | ||| || | |||| || ||| | ||||| ||| |||| | || || || || Sbjct 134921 AAGGT----TG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACA 134975 Query 111652 GGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCC 111711 ||| ||||||||||||| ||| | |||||| | | |||||||| | ||||| || Sbjct 134976 AGGATGATATTGATTCTGCTTT-AAAACATACCATATGATGTCCCAAAGATGGTTCACCC 135034 Query 111712 ACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | ||| | || || || || || ||||| || ||||| ||||| Sbjct 135035 ATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 135077 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/223 (69%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 111537 GACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC-AAAG----ACTGG 111591 |||| || ||| ||||| |||| ||||| |||| ||||||| |||| | || Sbjct 124318 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 124377 Query 111592 ATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATG 111651 | ||| || | |||| || ||| | ||||| ||| |||| | || || || || Sbjct 124378 ACGGT----TG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACA 124432 Query 111652 GGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCC 111711 ||| ||||||||||||| | | | |||||| | | |||||||| | ||||| || Sbjct 124433 AGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCC 124492 Query 111712 ACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | ||| | || || || || || ||||| || ||||| ||||| Sbjct 124493 ATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 124535 >seq5924 Length=8700 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/223 (69%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 111537 GACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC-AAAG----ACTGG 111591 |||| || ||| ||||| |||| ||||| |||| ||||||| |||| | || Sbjct 7748 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 7689 Query 111592 ATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATG 111651 | ||| || | |||| || ||| | ||||| ||| |||| | || || || || Sbjct 7688 AAGGT----TG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACA 7634 Query 111652 GGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCC 111711 ||| ||||||||||||| | | | |||||| | | |||||||| | ||||| || Sbjct 7633 AGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCC 7574 Query 111712 ACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | ||| | || || || || || ||||| || ||||| ||||| Sbjct 7573 ATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 7531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620626670338800