Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10828 150 2e-31 seq5989 105 8e-18 seq7036 100 3e-16 seq5924 100 3e-16 seq9360 96.9 4e-15 seq13915 95.1 1e-14 >seq10828 Length=125459 Score = 150 bits (166), Expect = 2e-31 Identities = 314/462 (68%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 17894 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 17835 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 17834 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 17777 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | |||| | | ||| |||| ||||||||||| ||||| | || ||||| || Sbjct 17776 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 17717 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || || || ||| | | || ||||| || || || || || ||||||||| Sbjct 17716 GGAGCGTTCTCTTTGGCCTTCTTGAAAAGATCTCGGACTCTAGATGCACCGACACCAACA 17657 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || || || ||| | |||||| || Sbjct 17656 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGC 17598 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| ||||||||||| || || ||||| ||| |||| || ||||| Sbjct 17597 AATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTT 17538 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||| || ||| | || |||||||||| | ||| || || ||||| | | Sbjct 17537 TGGAATACGAGCTCCAATAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CAC 17481 Query 9641 TTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 |||| || || | ||| || | |||| || ||||||| Sbjct 17480 TTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 17439 >seq5989 Length=495927 Score = 105 bits (116), Expect = 8e-18 Identities = 171/241 (71%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 135090 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 135031 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 |||| | |||||||||| | | |||||| | ||| |||||||||| || ||| ||| Sbjct 135030 GAACCATCTTTGGGACATCATATGGTATGTTTTAAAG-CAGAATCAATATCATCCTTGTG 134972 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334 || || || | || | ||| ||||| | || ||| |||| | | | || | || Sbjct 134971 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 134913 Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 134912 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 134853 Query 107394 G 107394 | Sbjct 134852 G 134852 Score = 100 bits (110), Expect = 3e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 124548 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 124489 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 124488 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 124429 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334 || || || | || | ||| ||||| | || ||| |||| | | | || | || Sbjct 124428 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCGTCCCTTGGA- 124370 Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 124369 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 124310 Query 107394 G 107394 | Sbjct 124309 G 124309 >seq7036 Length=357795 Score = 100 bits (110), Expect = 3e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 || ||| | ||||||||| |||||||| || || || || | ||| || | ||| | Sbjct 206683 CACCTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCG 206742 Query 107224 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 ||| |||||| | | |||||| | | ||||||||||||| ||| ||| || || | Sbjct 206743 TTGAGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAAC 206802 Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 107343 || || | ||| ||||| | ||||||| |||| | | | || | || | || ||| Sbjct 206803 AGCAACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAG 206860 Query 107344 A--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 206861 AGGTAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 206913 >seq5924 Length=8700 Score = 100 bits (110), Expect = 3e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 7518 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 7577 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 7578 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 7637 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334 || || || | || | ||| ||||| | || ||| |||| | | | || | || Sbjct 7638 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 7696 Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 7697 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 7756 Query 107394 G 107394 | Sbjct 7757 G 7757 >seq9360 Length=2047533 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||||||||| || || | || |||||||| || || ||||| | || Sbjct 1278002 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1277943 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 1277942 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1277883 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 |||||||| | | | ||| ||||| | |||| | ||| | ||| || | Sbjct 1277882 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCC-----GTCGATCCAATTTAAC 1277828 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522 ||||| | || ||||| | | || || || || | |||||| | ||| | | ||| Sbjct 1277827 GCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 1277768 Query 117523 TTTTC 117527 ||||| Sbjct 1277767 TTTTC 1277763 >seq13915 Length=807303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 460025 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 459968 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 459967 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 459908 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || ||| || ||| | ||||| | ||| | || || ||||| |||||| Sbjct 459907 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 459848 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 ||||||| ||| ||||| | || ||| | |||| Sbjct 459847 ACAAACAACTCAACAAACTCTGAGGCAGCACAT 459815 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||| ||| || |||||||| || |||||||| || || | |||||| || || Sbjct 137021 AAAGCCATTCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 136962 Query 9341 CATACCACCAGCACTGCGTTG-CTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || || || | | || || ||||| |||||||| |||||||| | ||||||| Sbjct 136961 TCTAAGCCCTGCTCCTCTCTGTCTCCCCCACAGCATCAATTTCATCAATAAGCACAATAC 136902 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 ||||| || ||| | ||||| | ||| | || || ||||||||||||| Sbjct 136901 ATGGTGCCTTCGGTTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCCACACCAA 136842 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 |||||| ||| ||||| | || ||| | ||| Sbjct 136841 CAAACAACTCAACAAACTCTGGGGCAGCACA 136811 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||| ||| || |||||||| || |||||||| || || | |||||| || || Sbjct 141628 AAAGCCATTCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 141569 Query 9341 CATACCACCAGCACTGCGTTG-CTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || || || | | || || ||||| |||||||| |||||||| | ||||||| Sbjct 141568 TCTAAGCCCTGCTCCTCTCTGTCTCCCCCACAGCATCAATTTCATCAATAAGCACAATAC 141509 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 ||||| || ||| | ||||| | ||| | || || ||||||||||||| Sbjct 141508 ATGGTGCCTTCGGTTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCCACACCAA 141449 Query 9460 CAAACATCTCCACAAAGTT 9478 |||||| ||| ||||| || Sbjct 141448 CAAACAACTCAACAAACTT 141430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589870805454600