Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq6848 609 3e-169 seq10805 379 2e-100 seq8585 127 2e-24 seq5748 87.8 2e-12 seq4440 87.8 2e-12 >seq6848 Length=375620 Score = 609 bits (674), Expect = 3e-169 Identities = 730/988 (74%), Gaps = 3/988 (0%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| | ||| |||| ||| | ||||| || || | |||||||| || || || Sbjct 331159 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 331218 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | ||| |||| Sbjct 331219 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCT-CTCC 331276 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 331277 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 331336 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || || |||||||| || | ||| ||||| ||||| || | || || || || || Sbjct 331337 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 331396 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| ||||| | ||||| ||||| || || || ||||||| | ||| | || Sbjct 331397 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 331456 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | |||||| | | ||| | | |||||||| ||||| ||||||||| | || Sbjct 331457 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 331516 Query 168222 TTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGC 168281 | | ||||||||||| ||||| ||||||||| || || || || || ||||||| ||| Sbjct 331517 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 331576 Query 168282 AGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 168341 || ||| | | || || |||||||||| ||||| ||||||| ||||| || ||||| Sbjct 331577 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 331636 Query 168342 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 168401 ||| || || ||||||| |||| | || ||||| ||||||||||| || || ||||| || Sbjct 331637 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 331696 Query 168402 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 168461 ||||| ||| | ||||| ||||| ||||| || ||| | || ||||||||||| || Sbjct 331697 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 331756 Query 168462 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 168521 ||||| || ||| | | | || || || || |||| ||||| || || Sbjct 331757 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 331816 Query 168522 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 168581 ||||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| || || Sbjct 331817 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 331876 Query 168582 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 168641 || |||||||||||||| ||| |||||||| || || || || || |||||||| || Sbjct 331877 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 331936 Query 168642 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 168701 ||| |||||||| || || ||||||||||| || | || | ||| ||||| ||||| Sbjct 331937 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 331996 Query 168702 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 168761 | | || |||||||| |||||||| || | ||||| |||| |||||||| | || || Sbjct 331997 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 332056 Query 168762 CTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 168821 |||||| ||| || | || || ||| || |||||||||||||||||||| ||||| || Sbjct 332057 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 332116 Query 168822 ACACAACTTCCCACTCGATCTTGCTGCT 168849 || |||||||| || || || |||||| Sbjct 332117 TCATAACTTCCCTCTAGACCTAGCTGCT 332144 Score = 609 bits (674), Expect = 3e-169 Identities = 730/988 (74%), Gaps = 3/988 (0%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| | ||| |||| ||| | ||||| || || | |||||||| || || || Sbjct 360610 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 360551 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | |||||||| Sbjct 360550 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 360492 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 360491 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 360432 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || || |||||||| || | ||| ||||| ||||| || | || || || || || Sbjct 360431 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 360372 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| ||||| | ||||| ||||| || || || ||||||| | ||| | || Sbjct 360371 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 360312 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | |||||| | | ||| | | |||||||| ||||| ||||||||| | || Sbjct 360311 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 360252 Query 168222 TTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGC 168281 | | ||||||||||| ||||| ||||| ||| || || || || || ||||||| ||| Sbjct 360251 TCTGGGTATGCGTCCTTGGATTGCTGTTG-ATATTCAGCTCCTGTTGCAGCAGCGACTGC 360193 Query 168282 AGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 168341 || ||| | | || || |||||||||| ||||| ||||||| ||||| || ||||| Sbjct 360192 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 360133 Query 168342 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 168401 ||| || || ||||||| |||| | || ||||| ||||||||||| || || ||||| || Sbjct 360132 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 360073 Query 168402 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 168461 ||||| ||| | ||||| ||||| ||||| || ||| | || ||||||||||| || Sbjct 360072 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 360013 Query 168462 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 168521 ||||| || ||| | | | || || || || |||| ||||| || || Sbjct 360012 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 359953 Query 168522 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 168581 ||||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| || || Sbjct 359952 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 359893 Query 168582 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 168641 || |||||||||||||| ||| |||||||| || || || || || |||||||| || Sbjct 359892 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 359833 Query 168642 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 168701 ||| |||||||| || || ||||||||||| || | || | ||| ||||| ||||| Sbjct 359832 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 359773 Query 168702 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 168761 | | || |||||||| |||||||| || | ||||| |||| |||||||| | || || Sbjct 359772 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 359713 Query 168762 CTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 168821 |||||| ||| || | || || ||| || |||||||||||||||||||| ||||| || Sbjct 359712 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 359653 Query 168822 ACACAACTTCCCACTCGATCTTGCTGCT 168849 || |||||||| || || || |||||| Sbjct 359652 TCATAACTTCCCTCTAGACCTAGCTGCT 359625 >seq10805 Length=1012358 Score = 379 bits (420), Expect = 2e-100 Identities = 519/725 (72%), Gaps = 0/725 (0%) Strand=Plus/Minus Query 169595 TGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTT 169654 |||| ||||| || || || ||||| || | | | || ||||||||| | | || ||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 169655 GAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATT 169714 ||| | || || || | || ||||||||||| || |||||||||| ||| ||| Sbjct 50146 GAACTTGCTCGCTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATT 50087 Query 169715 GCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCT 169774 ||||| ||||| ||| || || || || ||||| || ||||| ||||||||||| Sbjct 50086 GCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 50027 Query 169775 CCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAAC 169834 || ||||| ||| | || || || | ||| | | || | ||||| || || || Sbjct 50026 CCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAAT 49967 Query 169835 TGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTT 169894 ||||| ||||| || || || |||||||| || || || | ||||||| || |||| Sbjct 49966 TGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTA 49907 Query 169895 TCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAAT 169954 | ||| || ||||| | ||| ||||| || || || | |||||| ||||| ||||| Sbjct 49906 TGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAAC 49847 Query 169955 ACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAAC 170014 || ||| || ||| | | || || | ||||| || ||||| |||||||| || ||| Sbjct 49846 ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAAC 49787 Query 170015 CGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTC 170074 ||||| ||||| || ||||| || |||| ||||| || || |||||| | ||||| || Sbjct 49786 CGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 49727 Query 170075 ATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCT 170134 ||||| ||||| || || | ||| | |||| || |||| | | ||||| || Sbjct 49726 ATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCC 49667 Query 170135 CTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAA 170194 || || || |||||||| || ||||| ||||| ||| | ||||| |||||||| ||| Sbjct 49666 CTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAA 49607 Query 170195 TTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCA 170254 |||||||| |||||||| ||||| || || || || || || ||||||| ||| |||| Sbjct 49606 TTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCG 49547 Query 170255 CCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAAC 170314 || ||||| || ||||||||| | || ||||| || || ||||| || | || ||| Sbjct 49546 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAAC 49487 Query 170315 GCACT 170319 || || Sbjct 49486 GCTCT 49482 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | ||||| || || || | ||||||||||| Sbjct 52630 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 52571 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| | ||| | || || ||| |||| |||||| | ||| Sbjct 52570 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 52511 Query 169427 GTTACTTCCTGGTACACCCACGGA 169450 || ||||| ||||| ||||| ||| Sbjct 52510 GTAACTTCATGGTATACCCATGGA 52487 >seq8585 Length=236491 Score = 127 bits (140), Expect = 2e-24 Identities = 186/263 (71%), Gaps = 5/263 (2%) Strand=Plus/Minus Query 169463 TACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGA 169522 || || |||||| |||||| | || || || || || |||||| | | | | Sbjct 27797 TATTTGGAAGGCTGCAACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCG 27738 Query 169523 CACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAA 169582 || || || | || ||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 27737 CATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAA 27678 Query 169583 TTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATG 169642 || || ||||| |||| ||||| || || || ||||| || | | | || |||||||| Sbjct 27677 TTAGGCGGTCTTTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATA 27618 Query 169643 CTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTC 169702 | | || || || | | | ||||| ||| ||||||||||| || |||||| Sbjct 27617 ATCTGTCAATTCAAACTTACTCACTTTATTTGCA-----CCTTATAATGCAATAGCATTC 27563 Query 169703 TCTGGTCCTATTGCTGTATTTGT 169725 | || ||| |||| ||| ||||| Sbjct 27562 TTTGCTCCAATTGTTGTTTTTGT 27540 >seq5748 Length=11951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 169553 GCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTT 169612 ||||||| ||||| ||||| ||||||||| ||||||| ||| | ||| || || Sbjct 11563 GCACAAGAAGATTTTACTCGCTAGTGTCAATTAAGTGGTCTTCGGACTTCTGTTGCCCTC 11504 Query 169613 CATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATT 169672 || |||| |||||| | || |||||||| | | || || || | | | ||||| Sbjct 11503 CAAAGTGCTTTTGCACTAATAGGTTTCATAATCTGTCAATTCAAACTTACTCACTTTATT 11444 Query 169673 GGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGT 169725 ||| ||||||||||| || ||||||| || ||| |||| ||| ||||| Sbjct 11443 TGCA-----CCTTATAATGCAATAGCATTCTTTGCTCCAATTGTTGTTTTTGT 11396 >seq4440 Length=615295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 169553 GCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTT 169612 ||||||| ||||| ||||| ||||||||| ||||||| ||| | ||| || || Sbjct 287908 GCACAAGAAGATTTTACTCGCTAGTGTCAATTAAGTGGTCTTCGGACTTCTGTTGCCCTC 287967 Query 169613 CATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATT 169672 || |||| |||||| | || |||||||| | | || || || | | | ||||| Sbjct 287968 CAAAGTGCTTTTGCACTAATAGGTTTCATAATCTGTCAATTCAAACTTACTCACTTTATT 288027 Query 169673 GGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGT 169725 ||| ||||||||||| || ||||||| || ||| |||| ||| ||||| Sbjct 288028 TGCA-----CCTTATAATGCAATAGCATTCTTTGCTCCAATTGTTGTTTTTGT 288075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574366496578200