Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq6848 659 0.0 seq10805 468 6e-127 seq6804 154 2e-32 seq8585 111 2e-19 >seq6848 Length=375620 Score = 659 bits (730), Expect = 0.0 Identities = 736/979 (75%), Gaps = 3/979 (0%) Strand=Plus/Plus Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCC 164832 ||| | ||| ||| | ||||||||||| | |||||||| |||||| | |||||||| Sbjct 331168 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 331227 Query 164833 TGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGA 164891 ||| | |||| || | ||| ||||||| || ||||| ||| |||| || || || Sbjct 331228 ACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCT-CTCCTCCAGTAGA 331285 Query 164892 CATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTC 164951 ||||| ||||||||||||||||| | || |||||| | || || ||||| || || || Sbjct 331286 TATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTC 331345 Query 164952 TGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGC 165011 |||||| | |||| ||||| || || || | || || || || || |||||||| Sbjct 331346 TGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC 331405 Query 165012 TGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTT 165071 ||| || | ||||||||||| ||||| || |||||||| || | |||| | ||||| Sbjct 331406 GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 331465 Query 165072 CCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTAT 165131 | | | ||||||||||| ||||||||||||||||||||||| || ||| || ||||| Sbjct 331466 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 331525 Query 165132 GCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCT 165191 ||||||||||||| || |||||| || ||||| || || || | || |||||| | Sbjct 331526 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTT 331585 Query 165192 GGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTAC 165251 | |||| || |||||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 331586 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 331645 Query 165252 TTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACAT 165311 ||| |||| ||| | || ||||| || || || ||||| |||||||| || |||||||| Sbjct 331646 TTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 331705 Query 165312 GCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGT 165371 | | ||||| ||||| |||||||| || || || ||| |||||||||||| | || Sbjct 331706 GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 331765 Query 165372 TACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTT 165431 || || | || | || || || |||| || | || ||||| | || Sbjct 331766 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATT 331825 Query 165432 TGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCAT 165491 || ||||| ||||| || ||||| ||||| ||||| ||||| || || || || | || Sbjct 331826 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGAT 331885 Query 165492 TTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCC 165551 |||||||| || ||||||||||| ||||| | || |||||||| || || ||||| Sbjct 331886 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCC 331945 Query 165552 TGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGG 165611 |||||| |||||||||||||||||| | ||| ||||||| ||||| |||||| | || || Sbjct 331946 TGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGG 332005 Query 165612 TTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGA 165671 |||||| |||||||| ||| | ||||||||||| | || ||| |||||||| Sbjct 332006 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGA 332065 Query 165672 CGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTT 165731 || | || |||||| || |||||||||||||||||||| ||||| ||||| ||||| Sbjct 332066 TATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 332125 Query 165732 CCCCCTCGACCTCGCTGCT 165750 ||| || ||||| |||||| Sbjct 332126 CCCTCTAGACCTAGCTGCT 332144 Score = 659 bits (730), Expect = 0.0 Identities = 736/979 (75%), Gaps = 3/979 (0%) Strand=Plus/Minus Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCC 164832 ||| | ||| ||| | ||||||||||| | |||||||| |||||| | |||||||| Sbjct 360601 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 360542 Query 164833 TGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGA 164891 ||| | |||| || | ||| ||||||| || ||||| |||||||| || || || Sbjct 360541 ACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 360483 Query 164892 CATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTC 164951 ||||| ||||||||||||||||| | || |||||| | || || ||||| || || || Sbjct 360482 TATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTC 360423 Query 164952 TGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGC 165011 |||||| | |||| ||||| || || || | || || || || || |||||||| Sbjct 360422 TGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC 360363 Query 165012 TGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTT 165071 ||| || | ||||||||||| ||||| || |||||||| || | |||| | ||||| Sbjct 360362 GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 360303 Query 165072 CCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTAT 165131 | | | ||||||||||| ||||||||||||||||||||||| || ||| || ||||| Sbjct 360302 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 360243 Query 165132 GCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCT 165191 ||||||||||||| || | |||| || ||||| || || || | || |||||| | Sbjct 360242 GCGTCCTTGGATTGCTGTTG-ATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTT 360184 Query 165192 GGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTAC 165251 | |||| || |||||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 360183 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 360124 Query 165252 TTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACAT 165311 ||| |||| ||| | || ||||| || || || ||||| |||||||| || |||||||| Sbjct 360123 TTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 360064 Query 165312 GCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGT 165371 | | ||||| ||||| |||||||| || || || ||| |||||||||||| | || Sbjct 360063 GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 360004 Query 165372 TACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTT 165431 || || | || | || || || |||| || | || ||||| | || Sbjct 360003 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATT 359944 Query 165432 TGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCAT 165491 || ||||| ||||| || ||||| ||||| ||||| ||||| || || || || | || Sbjct 359943 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGAT 359884 Query 165492 TTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCC 165551 |||||||| || ||||||||||| ||||| | || |||||||| || || ||||| Sbjct 359883 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCC 359824 Query 165552 TGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGG 165611 |||||| |||||||||||||||||| | ||| ||||||| ||||| |||||| | || || Sbjct 359823 TGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGG 359764 Query 165612 TTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGA 165671 |||||| |||||||| ||| | ||||||||||| | || ||| |||||||| Sbjct 359763 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGA 359704 Query 165672 CGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTT 165731 || | || |||||| || |||||||||||||||||||| ||||| ||||| ||||| Sbjct 359703 TATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 359644 Query 165732 CCCCCTCGACCTCGCTGCT 165750 ||| || ||||| |||||| Sbjct 359643 CCCTCTAGACCTAGCTGCT 359625 >seq10805 Length=1012358 Score = 468 bits (518), Expect = 6e-127 Identities = 544/731 (74%), Gaps = 2/731 (0%) Strand=Plus/Minus Query 166448 TTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTT 166507 |||| | ||||||||||||||||||||||| | ||||| ||||||||| | || || || Sbjct 50207 TTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATT 50148 Query 166508 TGAAATCGCTCGTCTAGTAGGTATT-CGTCCGTACAATGCAATCGCTTTTTCTGGTCCTA 166566 |||| | ||||| || | ||| || || || |||||||| || || |||| ||| | Sbjct 50147 TGAACTTGCTCG-CTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAA 50089 Query 166567 TTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCG 166626 ||||||| || ||| ||| || || || || || || ||||| || ||||||| || | Sbjct 50088 TTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTG 50029 Query 166627 CTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACA 166686 | || ||| || || | || || || |||||| ||||||| | ||||| || || | Sbjct 50028 CGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATA 49969 Query 166687 ACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGC 166746 | |||||| ||||||| |||||||||||||| || || ||| | | || | ||| ||| Sbjct 49968 ATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGC 49909 Query 166747 TTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAA 166806 | | |||||| ||||| | ||| ||||| || ||| | | | |||||||||| |||| Sbjct 49908 TATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAA 49849 Query 166807 ATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAA 166866 | || ||| || || || | || |||| |||||||||||||| ||||| || || | Sbjct 49848 ACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTA 49789 Query 166867 ACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCT 166926 |||||| ||||||||| ||||| || |||| ||| ||||| | ||||| ||||||| Sbjct 49788 ACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 49729 Query 166927 TTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTG 166986 ||||| | ||||| || || | ||| | |||| ||| | | || | | || || | Sbjct 49728 TTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAG 49669 Query 166987 CTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTG 167046 | || ||||| |||||||||||||| |||||||| ||| | | ||||| || ||||||| Sbjct 49668 CCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTG 49609 Query 167047 AGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGG 167106 | ||||| || ||||| || || || ||||| || || |||||||| ||| ||||||||| Sbjct 49608 AATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGG 49549 Query 167107 CAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTA 167166 | || ||||| |||||||| | | |||||||||| |||||||| || | || | Sbjct 49548 CGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAA 49489 Query 167167 ACGCTCTCTAA 167177 ||||||| ||| Sbjct 49488 ACGCTCTTTAA 49478 >seq6804 Length=382778 Score = 154 bits (170), Expect = 2e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 166980 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAG 167039 || || || || ||||| |||||||||||||| |||||||||||| | | ||||| | Sbjct 63706 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGAAA 63647 Query 167040 GATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCT 167099 |||||||| ||||| | ||||| || || || ||||| || || |||||||| ||| || Sbjct 63646 GATCCTGAATTTGAGAATTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 63587 Query 167100 TGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCT 167159 |||||||| || ||||| |||||||| | | |||||||||| |||||||| || Sbjct 63586 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 63527 Query 167160 AGAGGTAACGCTCTCTAA 167177 | || |||||||| ||| Sbjct 63526 CGTGGAAACGCTCTTTAA 63509 >seq8585 Length=236491 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 166317 TATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGG 166375 ||| |||| || ||||| ||| | || || |||||||| ||||| || || | | | Sbjct 27797 TATTTGGAAGGCTGCAA-CTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGC 27739 Query 166376 TCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCA 166435 |||||| | | | || ||||||||||| || ||||| ||||| | ||||| || Sbjct 27738 GCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCA 27679 Query 166436 ACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCAT 166495 | | || || |||||| | ||||||||||||||||||||||| | ||||| |||||||| Sbjct 27678 ATTAGGCGGTCTTTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCAT 27619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563555712489600