Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq6848 473 4e-129 >seq6848 Length=375620 Score = 473 bits (524), Expect = 4e-129 Identities = 702/986 (71%), Gaps = 7/986 (1%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | || ||||| || || | Sbjct 331159 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 331218 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| | |||||||| || | | Sbjct 331219 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCT-CTC 331275 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| || || || ||||| || ||||| || || || | || ||||||| Sbjct 331276 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 331335 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || | ||| || || || | ||||||||||||| Sbjct 331336 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 331395 Query 26040 TCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 | |||||||| |||| | | || || ||| ||||||||||||| || ||| | || ||| Sbjct 331396 TATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATT 331454 Query 26099 ATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTAC 26158 | | ||||||||| | || ||||| || || | |||||||||| || | Sbjct 331455 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 331514 Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTC 26218 | || || ||| | || ||||| |||||||||| |||| || | | ||||| Sbjct 331515 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACT 331574 Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | || || |||| ||||| |||||| |||||| |||||||| || Sbjct 331575 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 331634 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||| ||| | |||||||| || || || || || || |||||| Sbjct 331635 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 331694 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 |||||||| ||| || || ||||| || ||||| || | || ||| ||||||||| Sbjct 331695 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 331754 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||| || || | || ||||| ||||| | | || ||| Sbjct 331755 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCA 331814 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || | || || ||||| ||||| || |||||||| || ||||| ||||| || ||| Sbjct 331815 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTT 331874 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || |||| || || || ||||| ||||| || || |||||| | |||||||| || Sbjct 331875 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTG 331934 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 ||| ||||||| || || || || ||| | || || | ||||| |||| ||||| || Sbjct 331935 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 331994 Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 ||| |||||||||| || || ||||| || ||||| ||| | | || |||| | Sbjct 331995 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 332054 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | || || |||||||| || | ||||||||||| || |||||| Sbjct 332055 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 332114 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || || ||| |||| Sbjct 332115 GCTCATAACTTCCCTCTAGACCTAGC 332140 Score = 473 bits (524), Expect = 4e-129 Identities = 702/986 (71%), Gaps = 7/986 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | || ||||| || || | Sbjct 360610 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 360551 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| | |||||||| || || | Sbjct 360550 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTC 360493 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| || || || ||||| || ||||| || || || | || ||||||| Sbjct 360492 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 360433 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || | ||| || || || | ||||||||||||| Sbjct 360432 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 360373 Query 26040 TCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 | |||||||| |||| | | || || ||| ||||||||||||| || ||| | || ||| Sbjct 360372 TATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATT 360314 Query 26099 ATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTAC 26158 | | ||||||||| | || ||||| || || | |||||||||| || | Sbjct 360313 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 360254 Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTC 26218 | || || ||| | || ||||| ||||| |||| |||| || | | ||||| Sbjct 360253 CGTCTGGGTATGCGTCCTTGGATTGCTGTTG-ATATTCAGCTCCTGTTGCAGCAGCGACT 360195 Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | || || |||| ||||| |||||| |||||| |||||||| || Sbjct 360194 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 360135 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||| ||| | |||||||| || || || || || || |||||| Sbjct 360134 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 360075 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 |||||||| ||| || || ||||| || ||||| || | || ||| ||||||||| Sbjct 360074 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 360015 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||| || || | || ||||| ||||| | | || ||| Sbjct 360014 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCA 359955 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || | || || ||||| ||||| || |||||||| || ||||| ||||| || ||| Sbjct 359954 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTT 359895 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || |||| || || || ||||| ||||| || || |||||| | |||||||| || Sbjct 359894 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTG 359835 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 ||| ||||||| || || || || ||| | || || | ||||| |||| ||||| || Sbjct 359834 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 359775 Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 ||| |||||||||| || || ||||| || ||||| ||| | | || |||| | Sbjct 359774 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 359715 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | || || |||||||| || | ||||||||||| || |||||| Sbjct 359714 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 359655 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || || ||| |||| Sbjct 359654 GCTCATAACTTCCCTCTAGACCTAGC 359629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146700412461960