Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq6848 553 5e-153 >seq6848 Length=375620 Score = 553 bits (612), Expect = 5e-153 Identities = 720/990 (73%), Gaps = 7/990 (1%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 332144 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 332085 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||| || | | ||| ||||| || || | | ||| | ||||| || Sbjct 332084 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 332025 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || | || |||||||||||| || || | || || Sbjct 332024 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 331965 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||||||||||||||||| ||| |||||| Sbjct 331964 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 331905 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || || ||||| || || || ||||| Sbjct 331904 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 331845 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || || ||| | | || ||||| Sbjct 331844 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 331785 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 331784 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 331725 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| || || | ||||||||| || ||||||||||| ||||| || |||||||| Sbjct 331724 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 331665 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||| ||||| |||||||||||||| || ||||||||||||||| |||||||| Sbjct 331664 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 331605 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || |||| ||||| | || || || | ||| | |||| ||||| || |||||||||| Sbjct 331604 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTCG-CTGCTGCAACAGGAGCTGAATATG 331546 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || ||||| || | | | ||||||||||||| | || |||| || Sbjct 331545 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 331486 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | ||||| | |||||| | || | || | || || || |||||||| | Sbjct 331485 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 331426 Query 5910 GCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967 ||||||||| | ||| || |||||||| || || || || || || || || || Sbjct 331425 ACCATTCATCAACGGAT--GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 331368 Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027 || | || | || || || || || || ||||||||||| ||||||||||| | || Sbjct 331367 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 331308 Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087 |||||||| || ||||| || || ||||| || | ||| | ||| || | |||||| | Sbjct 331307 AGGTTCACGAATACCGTCAATATCTACTGGAGGAG-AGCAATGAAGGCGATAATAAATAC 331249 Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 || ||||||||| || | | || ||||| || ||||||||||| || | || || || Sbjct 331248 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGACG 331189 Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| | |||||||| | ||||| |||||| Sbjct 331188 GTTTTCAGTGCTAGTTATCCAGTTACAGAA 331159 Score = 553 bits (612), Expect = 5e-153 Identities = 720/990 (73%), Gaps = 7/990 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 359625 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 359684 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||| || | | ||| ||||| || || | | ||| | ||||| || Sbjct 359685 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 359744 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || | || |||||||||||| || || | || || Sbjct 359745 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 359804 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||||||||||||||||| ||| |||||| Sbjct 359805 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 359864 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || || ||||| || || || ||||| Sbjct 359865 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 359924 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || || ||| | | || ||||| Sbjct 359925 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 359984 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 359985 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 360044 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| || || | ||||||||| || ||||||||||| ||||| || |||||||| Sbjct 360045 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 360104 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||| ||||| |||||||||||||| || ||||||||||||||| |||||||| Sbjct 360105 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 360164 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || |||| ||||| | || || || | ||| | |||| ||||| || ||||||||| Sbjct 360165 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTCG-CTGCTGCAACAGGAGCTGAATAT- 360222 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || ||||| || | | | ||||||||||||| | || |||| || Sbjct 360223 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 360282 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | ||||| | |||||| | || | || | || || || |||||||| | Sbjct 360283 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 360342 Query 5910 GCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967 ||||||||| | ||| || |||||||| || || || || || || || || || Sbjct 360343 ACCATTCATCAACGGAT--GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 360400 Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027 || | || | || || || || || || ||||||||||| ||||||||||| | || Sbjct 360401 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 360460 Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087 |||||||| || ||||| || || ||||| || ||||| | ||| || | |||||| | Sbjct 360461 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 360520 Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 || ||||||||| || | | || ||||| || ||||||||||| || | || || || Sbjct 360521 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGACG 360580 Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| | |||||||| | ||||| |||||| Sbjct 360581 GTTTTCAGTGCTAGTTATCCAGTTACAGAA 360610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152622563370690