Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq6848 504 2e-138 >seq6848 Length=375620 Score = 504 bits (558), Expect = 2e-138 Identities = 707/986 (72%), Gaps = 7/986 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 332140 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 332081 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| |||| ||| |||||||| || | || | || | |||||| || || Sbjct 332080 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 332021 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || |||||||||||| | || | ||| || | | Sbjct 332020 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 331961 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||||||||||||||||| ||| ||| || || Sbjct 331960 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 331901 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || || ||||| || || || ||||| || Sbjct 331900 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 331841 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || || ||||||| | || ||||| | Sbjct 331840 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 331781 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 331780 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAAT 331724 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || || || | ||| ||||| || ||||||||||| ||||| || ||||| || Sbjct 331723 ACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 331664 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| ||| || |||||||| || || || || ||||||||||||||||| ||||| ||| Sbjct 331663 ACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCT 331604 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || || | ||||||| ||||| |||||| |||||||||||||| |||||||| || Sbjct 331603 TGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCA 331544 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 331543 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 331484 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | | ||||| | ||||| || | ||| || || || || || ||| Sbjct 331483 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 331424 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | || ||| |||||||| || ||||| || || | ||| || || ||| Sbjct 331423 CATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAA 331364 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || || || || ||||||||||| |||| | ||| || ||||| Sbjct 331363 GTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 331304 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 ||||||||||| || ||||| || ||||| | ||||| || || || | |||| | | Sbjct 331303 TCACGAATACCGTCAATATCTACTGGAGGAG-AGCAATGAAGGCGATAATAAATACAGAA 331245 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 331244 GTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGACGGTTT 331185 Query 26410 TTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||||| ||| || Sbjct 331184 TCAGTGCTAGTTATCCAGTTACAGAA 331159 Score = 504 bits (558), Expect = 2e-138 Identities = 707/986 (72%), Gaps = 7/986 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 359629 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 359688 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| |||| ||| |||||||| || | || | || | |||||| || || Sbjct 359689 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 359748 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || |||||||||||| | || | ||| || | | Sbjct 359749 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 359808 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||||||||||||||||| ||| ||| || || Sbjct 359809 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 359868 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || || ||||| || || || ||||| || Sbjct 359869 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 359928 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || || ||||||| | || ||||| | Sbjct 359929 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 359988 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 359989 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAAT 360045 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || || || | ||| ||||| || ||||||||||| ||||| || ||||| || Sbjct 360046 ACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 360105 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| ||| || |||||||| || || || || ||||||||||||||||| ||||| ||| Sbjct 360106 ACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCT 360165 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || || | ||||||| ||||| |||||| |||||||||||||| ||||||| | | Sbjct 360166 TGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAAT-ATCA 360224 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 360225 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 360284 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | | ||||| | ||||| || | ||| || || || || || ||| Sbjct 360285 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 360344 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | || ||| |||||||| || ||||| || || | ||| || || ||| Sbjct 360345 CATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAA 360404 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || || || || ||||||||||| |||| | ||| || ||||| Sbjct 360405 GTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 360464 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 ||||||||||| || ||||| || ||||| ||||||| || || || | |||| | | Sbjct 360465 TCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAA 360524 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 360525 GTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGACGGTTT 360584 Query 26410 TTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||||| ||| || Sbjct 360585 TCAGTGCTAGTTATCCAGTTACAGAA 360610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151966679558540