Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq6848 580 1e-160 >seq6848 Length=375620 Score = 580 bits (642), Expect = 1e-160 Identities = 699/948 (74%), Gaps = 7/948 (1%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 |||||||| ||||| |||||||||||| || | | ||| | || || || || Sbjct 331201 GGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 331260 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| | |||||||| ||||| || ||||| | ||||||||| | || || Sbjct 331261 GCCTTCATTGCT-CTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCT 331319 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || |||||||| | |||||| ||| ||||| ||| Sbjct 331320 CTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGT 331379 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || |||||||| ||| | ||||||| ||||| || ||||| || Sbjct 331380 TTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGT 331439 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| | || | || | |||||| | | || | | ||| |||||| || Sbjct 331440 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 331499 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | ||||||||||||||||| ||||||||| || || || Sbjct 331500 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 331559 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | ||||| ||||| |||||| |||| || |||||||||| ||| ||||| Sbjct 331560 GTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 331619 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || || ||||||||||| |||| |||| | || ||||| || |||||| Sbjct 331620 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 331679 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| ||||| ||| | || || || ||||||||||| || || || Sbjct 331680 AACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTA 331739 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || ||||||||||| ||||| | || || ||| | | ||||| ||||| || || | Sbjct 331740 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAAT 331799 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || ||||| | ||||| ||||| ||||| ||||| || || || ||| Sbjct 331800 GAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCT 331859 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 ||||| || || ||||| || ||||||||||| ||||| ||||||||| || ||||| Sbjct 331860 GCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 331919 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | || |||||||| ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 331920 TTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATT 331979 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCA 163377 |||||||| |||||| | || |||||||| ||||||||||| || ||||| | Sbjct 331980 AGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 332039 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAA 163437 ||| || || ||| ||| ||||| ||||| |||| | || |||||||||||| Sbjct 332040 GGTCGT---GTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAA 332096 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 332097 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 332144 Score = 580 bits (642), Expect = 1e-160 Identities = 699/948 (74%), Gaps = 7/948 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 |||||||| ||||| |||||||||||| || | | ||| | || || || || Sbjct 360568 GGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 360509 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| || ||||| | ||||||||| | || || Sbjct 360508 GCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCT 360449 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || |||||||| | |||||| ||| ||||| ||| Sbjct 360448 CTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGT 360389 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || |||||||| ||| | ||||||| ||||| || ||||| || Sbjct 360388 TTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGT 360329 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| | || | || | |||||| | | || | | ||| |||||| || Sbjct 360328 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 360269 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | ||||||||||||||||| ||||| ||| || || || Sbjct 360268 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTG-ATATTCAGCTCCT 360210 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | ||||| ||||| |||||| |||| || |||||||||| ||| ||||| Sbjct 360209 GTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 360150 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || || ||||||||||| |||| |||| | || ||||| || |||||| Sbjct 360149 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 360090 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| ||||| ||| | || || || ||||||||||| || || || Sbjct 360089 AACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTA 360030 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || ||||||||||| ||||| | || || ||| | | ||||| ||||| || || | Sbjct 360029 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAAT 359970 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || ||||| | ||||| ||||| ||||| ||||| || || || ||| Sbjct 359969 GAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCT 359910 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 ||||| || || ||||| || ||||||||||| ||||| ||||||||| || ||||| Sbjct 359909 GCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 359850 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | || |||||||| ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 359849 TTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATT 359790 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCA 163377 |||||||| |||||| | || |||||||| ||||||||||| || ||||| | Sbjct 359789 AGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 359730 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAA 163437 ||| || || ||| ||| ||||| ||||| |||| | || |||||||||||| Sbjct 359729 GGTCGT---GTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAA 359673 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 359672 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 359625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552981684252600