Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq6848 545 3e-150 seq10805 428 5e-115 seq8585 120 3e-22 seq6379 105 8e-18 >seq6848 Length=375620 Score = 545 bits (604), Expect = 3e-150 Identities = 716/988 (72%), Gaps = 3/988 (0%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 ||||| | ||| ||||| || | ||||| || || | |||||||| || || || Sbjct 331159 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 331218 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | ||| |||| Sbjct 331219 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCT-CTCC 331276 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || |||||||| || ||||| || || |||| || || | ||||| ||||| Sbjct 331277 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 331336 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || || |||||||| || |||| |||| || || ||| | || || || || || Sbjct 331337 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 331396 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 331397 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 331456 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | |||||| | | || | | || ||||| ||||| ||||||||| | || Sbjct 331457 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 331516 Query 163251 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 163310 | |||||||| || ||||| ||| ||||| || || |||||||||||||| | || Sbjct 331517 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 331576 Query 163311 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 163370 || ||| || |||| || |||||||||| ||| ||||| | ||||| || || || Sbjct 331577 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 331636 Query 163371 CTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 163430 |||||| || ||||||| |||| |||| ||||| || |||||||||||||| |||||||| Sbjct 331637 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 331696 Query 163431 CTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 ||||| ||||| || || |||||||| ||||| || || || ||| || |||||||| Sbjct 331697 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 331756 Query 163491 CAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGG 163550 | || |||||| | || | || || || |||| ||| || || || Sbjct 331757 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 331816 Query 163551 TTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 163610 ||||| || |||||||| ||||| || || || ||||| || || || || || || || Sbjct 331817 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 331876 Query 163611 TCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGC 163670 || ||||||||||||||||| |||||||| | | | || ||||||||||| Sbjct 331877 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 331936 Query 163671 AGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAA 163730 || |||||||| || || |||||||| ||||| | || | ||||| ||||| ||||| Sbjct 331937 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 331996 Query 163731 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACAC 163790 | | || |||||||| |||||||| || | ||||| |||| |||||||| | || || Sbjct 331997 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 332056 Query 163791 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 163850 ||||| || | |||| || ||| || |||||||||||||||||||| ||||| || Sbjct 332057 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 332116 Query 163851 ACACAACTTCCCACTCGATCTTGCTGCT 163878 || |||||||| || || || |||||| Sbjct 332117 TCATAACTTCCCTCTAGACCTAGCTGCT 332144 Score = 545 bits (604), Expect = 3e-150 Identities = 716/988 (72%), Gaps = 3/988 (0%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 ||||| | ||| ||||| || | ||||| || || | |||||||| || || || Sbjct 360610 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 360551 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | |||||||| Sbjct 360550 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 360492 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || |||||||| || ||||| || || |||| || || | ||||| ||||| Sbjct 360491 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 360432 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || || |||||||| || |||| |||| || || ||| | || || || || || Sbjct 360431 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 360372 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 360371 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 360312 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | |||||| | | || | | || ||||| ||||| ||||||||| | || Sbjct 360311 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 360252 Query 163251 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 163310 | |||||||| || ||||| ||| | ||| || || |||||||||||||| | || Sbjct 360251 TCTGGGTATGCGTCCTTGGATTGCTGTTG-ATATTCAGCTCCTGTTGCAGCAGCGACTGC 360193 Query 163311 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 163370 || ||| || |||| || |||||||||| ||| ||||| | ||||| || || || Sbjct 360192 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 360133 Query 163371 CTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 163430 |||||| || ||||||| |||| |||| ||||| || |||||||||||||| |||||||| Sbjct 360132 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 360073 Query 163431 CTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 ||||| ||||| || || |||||||| ||||| || || || ||| || |||||||| Sbjct 360072 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 360013 Query 163491 CAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGG 163550 | || |||||| | || | || || || |||| ||| || || || Sbjct 360012 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 359953 Query 163551 TTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 163610 ||||| || |||||||| ||||| || || || ||||| || || || || || || || Sbjct 359952 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 359893 Query 163611 TCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGC 163670 || ||||||||||||||||| |||||||| | | | || ||||||||||| Sbjct 359892 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 359833 Query 163671 AGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAA 163730 || |||||||| || || |||||||| ||||| | || | ||||| ||||| ||||| Sbjct 359832 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 359773 Query 163731 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACAC 163790 | | || |||||||| |||||||| || | ||||| |||| |||||||| | || || Sbjct 359772 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 359713 Query 163791 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 163850 ||||| || | |||| || ||| || |||||||||||||||||||| ||||| || Sbjct 359712 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 359653 Query 163851 ACACAACTTCCCACTCGATCTTGCTGCT 163878 || |||||||| || || || |||||| Sbjct 359652 TCATAACTTCCCTCTAGACCTAGCTGCT 359625 >seq10805 Length=1012358 Score = 428 bits (474), Expect = 5e-115 Identities = 535/731 (73%), Gaps = 2/731 (0%) Strand=Plus/Minus Query 164895 TGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTT 164954 |||| ||| || |||||||||||||| |||| ||||| ||||||||| | || || ||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 164955 GAGCTGGCACGTCTCATTGGTATC-CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 165013 || || || || ||| | || || ||||| ||||| || || ||||||| ||| || Sbjct 50146 GAACTTGCTCG-CTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAAT 50088 Query 165014 TGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGC 165073 |||||||||||| || ||||| || || ||||| |||||||| ||||||| || || Sbjct 50087 TGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 50028 Query 165074 TCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAA 165133 || ||||| || || || || ||| ||||| | | || | ||||| || || || Sbjct 50027 GCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAA 49968 Query 165134 CTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCT 165193 ||||| | |||||||| ||||||||||| ||||| ||| | ||||| | || |||| Sbjct 49967 TTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCT 49908 Query 165194 ATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAA 165253 || ||| |||||||| | || || |||||||| |||| || ||||| || ||||| Sbjct 49907 ATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAA 49848 Query 165254 TACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAA 165313 || || || ||| | | || || | ||||| || ||||| |||||||| || || Sbjct 49847 CACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAA 49788 Query 165314 CCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTT 165373 |||||| ||||| || ||||| || |||| ||||| || || || ||| | ||||| || Sbjct 49787 CCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTT 49728 Query 165374 CATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGC 165433 ||||| ||||| || || | ||| | |||| || |||| | | || || || Sbjct 49727 TATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGC 49668 Query 165434 TCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGA 165493 || ||||| |||||||| || ||||| ||||| ||| | ||||| |||||||| || Sbjct 49667 CCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGA 49608 Query 165494 ATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGC 165553 ||||||||| |||||||| ||||| || || || || || || | ||||||||| |||| Sbjct 49607 ATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGC 49548 Query 165554 ACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAA 165613 || ||||| || ||||||||| |||| ||||| || || || | || | || || Sbjct 49547 GGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAA 49488 Query 165614 CGCCCTTTAAT 165624 ||| ||||||| Sbjct 49487 CGCTCTTTAAT 49477 >seq8585 Length=236491 Score = 120 bits (132), Expect = 3e-22 Identities = 189/268 (71%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 164759 TTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTA 164817 ||||||| | ||||| ||| ||||| | || || || || ||||| |||||| || | Sbjct 27801 TTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTT 27743 Query 164818 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGT 164877 | | |||||| | | |||| ||||||||||| | || || |||| || |||| Sbjct 27742 TAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGT 27683 Query 164878 GCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTT 164937 | ||| | || || || |||| ||| || |||||||||||||| |||| ||||| |||| Sbjct 27682 GTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTT 27623 Query 164938 TCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATCCGTCCTTACAATGCTATTG 164997 |||| || | || || | || | | | ||| | | ||||| ||||| || | Sbjct 27622 TCATAATCTGTCAATTCAAACTTACTCACTTTATTTGCA-----CCTTATAATGCAATAG 27568 Query 164998 CGTTCTCTGGTCCTATTGCTGTTTTTGT 165025 | |||| || ||| |||| ||||||||| Sbjct 27567 CATTCTTTGCTCCAATTGTTGTTTTTGT 27540 >seq6379 Length=444603 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 ||||| ||||| | || ||||| || ||| | || | ||||| ||||| |||||| Sbjct 174047 TACATCATAGACTCTGCCGAAGATGCTGGAATGGAGCTACCCTACTCATGTCGGGCTGGT 174106 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 || ||||| | ||||| || | || || || || | ||||| || ||| ||| Sbjct 174107 GCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGGCTCCGTTGACCAATCAGATGGATCA 174166 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 ||||| || ||| | ||||| | ||| ||||||||||| || || |||||||||||| Sbjct 174167 TTCCTTGATGATAAGCAGATGGAGAAAGGTTTCGTGCTTACATGCGTTGCATATCCAACA 174226 Query 164243 TCTGATTGTGT 164253 || |||||||| Sbjct 174227 TCAGATTGTGT 174237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563104596610200