Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9360 100 5e-16 seq5601 100 5e-16 >seq9360 Length=2047533 Score = 100 bits (110), Expect = 5e-16 Identities = 362/562 (64%), Gaps = 11/562 (2%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || || || | ||| | || || || || ||| | | |||| ||||| Sbjct 1278020 CAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 1277961 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 | || ||||| | ||| | || ||||||||| || || || ||| || ||||| Sbjct 1277960 TAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAA 1277901 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || |||||||| || |||||| | | ||||| |||||| | ||| Sbjct 1277900 GAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC 1277841 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| | |||||| || ||||| || ||| || | |||||| ||||| Sbjct 1277840 ---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGC 1277784 Query 48367 CCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGC 48423 | ||||| ||||| || | | ||| | || || || ||| | Sbjct 1277783 GTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGA 1277727 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| || ||||| | ||||| || ||||| ||||| ||||||||||| | ||||| Sbjct 1277726 GTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTC 1277667 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 ||||| || || || ||| || ||| || || ||||| ||| || || || | Sbjct 1277666 GGCGACCTGGACCTCCGTCATGAACCT-TCCGGCGAGGTTCTCGAGGACGATGCCGTCGG 1277608 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || |||||||| || || || | | ||| || ||||| ||| || || | Sbjct 1277607 AGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCT 1277548 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | | |||| || || ||||| || | ||||| || ||||| | Sbjct 1277547 CCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGG 1277488 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 |||| |||||||| |||| || Sbjct 1277487 CTTTCTTGTACATTTCCCAAAT 1277466 >seq5601 Length=566945 Score = 100 bits (110), Expect = 5e-16 Identities = 421/659 (64%), Gaps = 18/659 (3%) Strand=Plus/Plus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| ||||||||| ||| || ||| ||| ||| ||| ||||| ||| | Sbjct 476311 AACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCTTCACGCGCTCCTCGCTTAAT 476370 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 ||||| | ||| || || | || ||| || || || | ||| | ||||| || Sbjct 476371 TTGTTCCTCAGCAAGCTG---TACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCT 476427 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 || ||| ||| |||| |||||| || || ||||| | ||| | || ||| | ||| Sbjct 476428 CGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAA 476487 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || || |||| || |||||||| || || ||||| || ||||| | || Sbjct 476488 AATATCGCGCAGAAACTACCCGAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGT 476547 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 ||||| |||| | | ||| |||||| || ||||| || ||||| || Sbjct 476548 CTCTCCGCGAATGTCTCCGAGCCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTG 476604 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCC 48397 | ||| |||| ||| || | ||| || || | | |||| || | | || Sbjct 476605 GCAACGCACGGCACCGTTTCAAAGGCGCGAAATAAGCGGCTCTTT---TCGTCGGAGTTT 476661 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | || || || || | |||||| || ||||| | ||||| || ||||| Sbjct 476662 TTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATT 476721 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||| ||||||||||| | ||||| | || || |||||| | ||| || | Sbjct 476722 TGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCG 476781 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 || || || ||| || || || || || || |||||||| || || || | | ||| Sbjct 476782 AGGTTTTCGAGGACGATTCCGTCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAG 476841 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT---GTACGTCTTTGCCCAGGTCCACT 48634 || ||||| | || || | ||||| | || | | ||| | |||||| || Sbjct 476842 TGTTTCTCGTCGGCCGTTAG-GGATTCC--CACTGGCGGATGTCCTGCGACAGGTCGACC 476898 Query 48635 TCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||| | ||||| || || || ||||| |||||||| |||| || ||||| || Sbjct 476899 TCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCAGATTTCCGGGTA 476957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931359127353600