Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq6848 605 3e-168 seq10805 470 2e-127 seq6804 111 2e-19 seq8117 102 8e-17 seq6913 95.1 1e-14 >seq6848 Length=375620 Score = 605 bits (670), Expect = 3e-168 Identities = 704/946 (74%), Gaps = 3/946 (0%) Strand=Plus/Plus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| || || ||| |||| || | || |||| Sbjct 331201 GGTTGGTTTGGTGTTTTGATGATCCCTACT-TTATTGACCGCAACTTCTGTATTTATTAT 331259 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| ||| ||||| ||||||| || || || ||||| || || ||||| ||| ||||||| Sbjct 331260 CGCCTTCATTGCT-CTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATC 331318 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | || || ||||| || || |||||||| || |||| | ||| || || || Sbjct 331319 TCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGG 331378 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | || || ||||| || |||||||| || || ||||||| ||| | ||||| || || Sbjct 331379 TTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGG 331438 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | |||||| | ||||| || | ||| ||||||||||| Sbjct 331439 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 331498 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||||||| || ||| || || |||||||||||||| ||||||||| || ||||| Sbjct 331499 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 331558 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 |||||| || || ||||||| ||| | |||| || | |||||||| || ||||| Sbjct 331559 TGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGA 331618 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 |||||||||||| || ||||| ||||| ||||||| ||| |||| |||||||||||||| Sbjct 331619 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 331678 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 ||||||||| |||||||| ||||||||| | || || |||||||| |||||||| || || Sbjct 331679 CAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCT 331738 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || ||||||||||| | || || ||| || | | || ||||| |||| Sbjct 331739 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAA 331798 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 || ||| || || |||| ||||||||||| || |||||||| || || || || Sbjct 331799 TGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 331858 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 ||||| || || ||||| || ||||||||||||||||| ||| ||||||||| | Sbjct 331859 TGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 331918 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 || ||||||||||| ||||| |||||||| || || |||||||| || || | || | Sbjct 331919 TTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 331978 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 || |||||||||||| | ||||| ||||| |||||||| || | | || | || Sbjct 331979 TAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 332038 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 ||| || || | || |||||||| || | |||| || || || ||||||||||| Sbjct 332039 AGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGT 332098 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 ||||| ||| | || || || |||||||| || ||||| || ||| Sbjct 332099 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 332144 Score = 605 bits (670), Expect = 3e-168 Identities = 704/946 (74%), Gaps = 3/946 (0%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| || || ||| |||| || | || |||| Sbjct 360568 GGTTGGTTTGGTGTTTTGATGATCCCTACT-TTATTGACCGCAACTTCTGTATTTATTAT 360510 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| ||| ||||||||||||| || || || ||||| || || ||||| ||| ||||||| Sbjct 360509 CGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATC 360450 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | || || ||||| || || |||||||| || |||| | ||| || || || Sbjct 360449 TCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGG 360390 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | || || ||||| || |||||||| || || ||||||| ||| | ||||| || || Sbjct 360389 TTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGG 360330 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | |||||| | ||||| || | ||| ||||||||||| Sbjct 360329 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 360270 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||||||| || ||| || || |||||||||||||| ||||| ||| || ||||| Sbjct 360269 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTG-ATATTCAGCTCC 360211 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 |||||| || || ||||||| ||| | |||| || | |||||||| || ||||| Sbjct 360210 TGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGA 360151 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 |||||||||||| || ||||| ||||| ||||||| ||| |||| |||||||||||||| Sbjct 360150 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 360091 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 ||||||||| |||||||| ||||||||| | || || |||||||| |||||||| || || Sbjct 360090 CAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCT 360031 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || ||||||||||| | || || ||| || | | || ||||| |||| Sbjct 360030 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAA 359971 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 || ||| || || |||| ||||||||||| || |||||||| || || || || Sbjct 359970 TGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 359911 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 ||||| || || ||||| || ||||||||||||||||| ||| ||||||||| | Sbjct 359910 TGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 359851 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 || ||||||||||| ||||| |||||||| || || |||||||| || || | || | Sbjct 359850 TTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 359791 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 || |||||||||||| | ||||| ||||| |||||||| || | | || | || Sbjct 359790 TAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 359731 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 ||| || || | || |||||||| || | |||| || || || ||||||||||| Sbjct 359730 AGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGT 359671 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 ||||| ||| | || || || |||||||| || ||||| || ||| Sbjct 359670 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 359625 >seq10805 Length=1012358 Score = 470 bits (520), Expect = 2e-127 Identities = 530/710 (75%), Gaps = 0/710 (0%) Strand=Plus/Minus Query 10103 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTT 10162 ||| ||||||| || |||||||| || |||| |||| || || |||||||| || ||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 10163 GAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATT 10222 || || || | | || | | |||||||| ||||| || || || |||| || ||| Sbjct 50146 GAACTTGCTCGCTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATT 50087 Query 10223 GCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCG 10282 ||||||||||| ||| ||||| || |||||||| || |||||| |||||||||||||| Sbjct 50086 GCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 50027 Query 10283 CCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAAT 10342 || ||||| || || |||||||| || || ||| | || || |||| || ||||||||| Sbjct 50026 CCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAAT 49967 Query 10343 TGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTA 10402 ||||| | || ||||| ||||||||||||||||| ||| || |||| | || || ||| Sbjct 49966 TGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTA 49907 Query 10403 TCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAAC 10462 | || || || || | || |||||||| || | | | ||||||| || |||||| Sbjct 49906 TGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAAC 49847 Query 10463 ACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAAC 10522 || ||| |||||| | || |||| ||||| |||||||||||||| || |||||| Sbjct 49846 ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAAC 49787 Query 10523 CGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTT 10582 || || ||||| || || ||||| |||||||| ||||||||| ||| | ||||||||| Sbjct 49786 CGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 49727 Query 10583 ATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCT 10642 ||| | |||||||| || | ||| | |||| | || ||||| | | || || || Sbjct 49726 ATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCC 49667 Query 10643 CTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAA 10702 || || || |||||||| || || || || || || ||| | || | |||||||||||| Sbjct 49666 CTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAA 49607 Query 10703 TTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCA 10762 |||||||| ||||| || || ||||| ||| | ||||| ||| ||||||| |||||||| Sbjct 49606 TTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCG 49547 Query 10763 CCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 | || || || || |||| | || | ||||| || || ||||| || Sbjct 49546 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 49497 >seq6804 Length=382778 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 10634 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAA 10693 || || || || || || |||||||| || || || || ||||| ||| | || | || Sbjct 63706 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGAAA 63647 Query 10694 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCA 10753 |||||||||||||||| ||||| || || ||||| ||| | ||||| ||| ||||||| Sbjct 63646 GATCCTGAATTTGAGAATTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 63587 Query 10754 TGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 |||||||| | || || || || |||| | || | ||||| || || ||||| || Sbjct 63586 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 63528 >seq8117 Length=261383 Score = 102 bits (112), Expect = 8e-17 Identities = 218/321 (68%), Gaps = 21/321 (7%) Strand=Plus/Plus Query 8728 TCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAA-CATCCTGATGCACCC 8786 |||||||| ||||||| ||| |||| ||| ||||||||| | | |||||| || | | Sbjct 21632 TCCGGTACTTTCAACTTCATGATTGTATTCGAGGCTGAGCTCCATCATCCTTGTGGATTC 21691 Query 8787 CTTCCACATGCTT-------GGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAA 8839 ||||||||| | || | ||||||| || ||||| |||| ||| Sbjct 21692 ATTCCACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGG---------TTCC-CAA 21741 Query 8840 TGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAA 8899 |||| |||| | || || ||| || | || || ||||| |||| || |||| | Sbjct 21742 TGCACGGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCA 21801 Query 8900 ACTATGGCTACA-AGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGC 8958 | | | |||| |||| |||| ||| | ||||||||| | ||||| | ||||||| Sbjct 21802 AGGAAAGATACAGAGTT-GGTCCAGAGAAAGAAACTTACGATATTGTATCTGCTCATGTT 21860 Query 8959 TACTTTGGTCGCTTGAT-CTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTT 9017 || ||||| ||||| ||||| |||||| ||| | ||||| | || ||||| Sbjct 21861 TATTTTGGCTTATTGATACTTCCGATATGCTGGTTTCAGCAATTTTCATTCTTTACATTT 21920 Query 9018 CTTCCTCGCTGCGTGGCCTGT 9038 |||||| | ||| ||||| || Sbjct 21921 CTTCCTAGATGCTTGGCCCGT 21941 >seq6913 Length=1432529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 10263 AGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCT 10322 ||||| |||| ||||||| ||| |||| || || | | |||| || || ||| | || | Sbjct 164059 AGTCTTGTTGATTCTTTGAGCCTCGTTTTGGTGTAGTGACGATATTTCGGTTCATCCTTT 164000 Query 10323 TCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTA 10382 | |||| || | | |||| ||||| | || ||||| ||||||||||||||||||||| Sbjct 163999 TTTTCCAAGGGTCTTATAAGTGGACATTAAACCCCTTTCATATGATGGGAGTTGCTGGTG 163940 Query 10383 TACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATC 10442 || | || | | | |||| || || || || ||| ||||||| || | | | Sbjct 163939 TATTAGGTGCTGTTCAGCTATGTGCTATTCATGGCACTACTATAGAAAATACTTTATTTG 163880 Query 10443 AAGATGGCGA 10452 ||||||| || Sbjct 163879 AAGATGGTGA 163870 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/178 (72%), Gaps = 7/178 (4%) Strand=Plus/Minus Query 10263 AGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTC------C 10316 ||||| ||| |||||||||||| ||||| || || | ||| || || || ||| | Sbjct 225177 AGTCTTGTTAGTTCTTTGCGCCTAGTTTTGGTGTAGTGGCAATATTACGGTTCATCCTTC 225118 Query 10317 TTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTG 10376 |||| || || |||| || |||| ||||| | || ||||| |||||||||||||||| Sbjct 225117 TTCTTTTTTTCAAGGGTCTT-ATAAGTGGACATTGAACCCCTTTCATATGATGGGAGTTG 225059 Query 10377 CTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACAC 10434 | || || |||| | || || |||| || || || | | ||| ||||||| || Sbjct 225058 CCTGTGTATTGGGCGCTGCTCTGCTATGTGCTATTCATAGCGCTACTATAGAAAATAC 225001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516383708760000