Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3221 91.5 1e-13 seq12505 86.0 5e-12 >seq3221 Length=646307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28547 TGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 ||| || ||||| |||||||| ||||| | || || || || || ||| |||| ||| Sbjct 212078 TGTGAAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGA 212019 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 || || || | | | | ||||| || ||| ||||| |||||| | || Sbjct 212018 GAGCTCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCC 211959 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 || || ||| | || |||||||| || || ||| | ||||| ||| ||||||| Sbjct 211958 GGACCAGCAGCGTCTCATCTTTGCAGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGA 211899 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||||||||||||||| ||| |||| Sbjct 211898 TTACAACATTCAAAAAGAATCCACTTTGCA 211869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || || || ||| ||| |||| Sbjct 219938 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 219879 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| ||||| || || | || ||||||| Sbjct 219878 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 219819 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||||||||| || |||| || |||||| Sbjct 219818 CAAAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGCCGCACGTTGGCTGACTATAAC 219759 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| || ||||| ||| Sbjct 219758 ATCCAGAAAGAGTCAACTCTTCAC 219735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| || || || || || ||| ||| |||| Sbjct 261574 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 261515 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| ||||| ||||| | || ||||||| Sbjct 261514 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAA 261455 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || |||||||||||||| || |||| || ||||| Sbjct 261454 CAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAAT 261395 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| || ||||| ||| Sbjct 261394 ATCCAGAAAGAGTCAACTCTTCAC 261371 >seq12505 Length=74167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||||| || ||||| || ||||||||||||||| | ||| | || ||| Sbjct 7886 GATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAAGATGGCAGAACGCTTGCAGAT 7945 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||| || || || || ||| |||| Sbjct 7946 TATAACATTCAAAAGGAGTCGACGCTTCACTTGGT 7980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425327471377785