Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq6848 506 6e-139 >seq6848 Length=375620 Score = 506 bits (560), Expect = 6e-139 Identities = 715/993 (72%), Gaps = 19/993 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 332141 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 332082 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | || | | |||||||| ||| | || | ||| | | | ||||| Sbjct 332081 AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 332024 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | || |||||||||||| || || | || || Sbjct 332023 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 331965 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||||| ||||||||||| | | |||||| Sbjct 331964 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 331905 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || || ||||| || || |||||||| Sbjct 331904 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 331845 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || || ||| ||| || || ||||| Sbjct 331844 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 331785 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 331784 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 331728 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || || || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 331727 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 331668 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | |||||| ||||||||||| || || ||||||||||||||||| ||||| Sbjct 331667 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 331608 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGA 18424 ||||| || | || || | | ||||| || || || || ||||| || || || || Sbjct 331607 TCCTTGACCGATTGGGTAGATCAAGAAA-AC--AGCAGTCGCTGCTGCAACAGGAGCTGA 331551 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| |||||| |||||| || |||||||| || | ||||||||||||| | || || Sbjct 331550 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 331491 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 ||||||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 331490 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 331431 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || | || ||| |||||||| || ||||| || || | ||| || || Sbjct 331430 GTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGC 331371 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664 ||| | || | || || || || || || ||||||||||| |||| | ||| || Sbjct 331370 TGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGA 331311 Query 18665 GACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAA 18724 ||||| ||||||||||| || || || || ||||||| ||||| || || || | ||| Sbjct 331310 AACAGGTTCACGAATACCGTCAATATCTACTGGAGGAG-AGCAATGAAGGCGATAATAAA 331252 Query 18725 TGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAG 18784 | | | || |||||| || | | ||||||||| | || |||||||| || | ||| || Sbjct 331251 TACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG 331192 Query 18785 GCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 ||||| | || || || | ||||| ||| || Sbjct 331191 ACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 331159 Score = 506 bits (560), Expect = 6e-139 Identities = 715/993 (72%), Gaps = 19/993 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 359628 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 359687 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | || | | |||||||| ||| | || | ||| | | | ||||| Sbjct 359688 AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 359745 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | || |||||||||||| || || | || || Sbjct 359746 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 359804 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||||| ||||||||||| | | |||||| Sbjct 359805 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 359864 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || || ||||| || || |||||||| Sbjct 359865 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 359924 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || || ||| ||| || || ||||| Sbjct 359925 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 359984 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 359985 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 360041 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || || || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 360042 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 360101 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | |||||| ||||||||||| || || ||||||||||||||||| ||||| Sbjct 360102 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 360161 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGA 18424 ||||| || | || || | | ||||| || || || || ||||| || || || || Sbjct 360162 TCCTTGACCGATTGGGTAGATCAAGAAA-AC--AGCAGTCGCTGCTGCAACAGGAGCTGA 360218 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| ||||| |||||| || |||||||| || | ||||||||||||| | || || Sbjct 360219 ATAT-CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 360277 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 ||||||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 360278 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 360337 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || | || ||| |||||||| || ||||| || || | ||| || || Sbjct 360338 GTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGC 360397 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664 ||| | || | || || || || || || ||||||||||| |||| | ||| || Sbjct 360398 TGCAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGA 360457 Query 18665 GACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAA 18724 ||||| ||||||||||| || || || || ||||||||||||| || || || | ||| Sbjct 360458 AACAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAA 360517 Query 18725 TGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAG 18784 | | | || |||||| || | | ||||||||| | || |||||||| || | ||| || Sbjct 360518 TACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG 360577 Query 18785 GCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 ||||| | || || || | ||||| ||| || Sbjct 360578 ACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 360610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151291599147010