Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq6848 515 5e-141 seq10805 239 5e-58 seq9227 96.9 4e-15 seq6000 86.0 7e-12 seq8585 84.2 3e-11 >seq6848 Length=375620 Score = 515 bits (570), Expect = 5e-141 Identities = 707/984 (72%), Gaps = 3/984 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 332140 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 332081 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | || | || |||| |||| || | | || | | |||||| || ||| Sbjct 332080 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 332021 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| |||||||| ||||| |||| ||||| | || || ||| Sbjct 332020 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 331961 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||| ||||| || | || |||||||| || | | | || |||||||| Sbjct 331960 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 331901 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| |||||||| || ||||| || || || ||| Sbjct 331900 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 331841 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| || || || | ||||| ||||| ||| Sbjct 331840 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 331781 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 331780 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 331721 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| ||||||||| || ||||| || ||||| ||||| || ||||| || Sbjct 331720 CCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 331661 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| |||||||||||||| ||||| || || |||||||||||||| || || ||| Sbjct 331660 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 331601 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| | ||||| ||||| || || | || || |||||||| |||||| Sbjct 331600 CCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAACA 331541 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||||||||| || | | | | |||||||||| | |||||||| Sbjct 331540 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 331481 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||||| | |||||| | || | | || ||||||||| ||||| || |||||| Sbjct 331480 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 331421 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||| | ||| |||||||| || ||||| || || | || ||||| || | Sbjct 331420 TCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTA 331361 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || |||||||| || || ||||| ||||| | | ||| || | || ||||| Sbjct 331360 GGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 331301 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || ||||| ||||| || ||||| | ||||| || || | || || ||| | | Sbjct 331300 CGAATACCGTCAATATCTACTGGAGGAG-AGCAATGAAGGCGATAATAAATACA-GAAGT 331243 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 ||| || | ||| || ||||| | ||||||||||||||||| |||| | ||| | Sbjct 331242 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGACGGTTTTC 331183 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||| ||| | |||||| Sbjct 331182 AGTGCTAGTTATCCAGTTACAGAA 331159 Score = 515 bits (570), Expect = 5e-141 Identities = 707/984 (72%), Gaps = 3/984 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 359629 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 359688 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | || | || |||| |||| || | | || | | |||||| || ||| Sbjct 359689 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 359748 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| |||||||| ||||| |||| ||||| | || || ||| Sbjct 359749 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 359808 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||| ||||| || | || |||||||| || | | | || |||||||| Sbjct 359809 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 359868 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| |||||||| || ||||| || || || ||| Sbjct 359869 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 359928 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| || || || | ||||| ||||| ||| Sbjct 359929 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 359988 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 359989 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 360048 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| ||||||||| || ||||| || ||||| ||||| || ||||| || Sbjct 360049 CCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 360108 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| |||||||||||||| ||||| || || |||||||||||||| || || ||| Sbjct 360109 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 360168 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| | ||||| ||||| || || | || || ||||||| | ||||| Sbjct 360169 CCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAAT-ATCAACA 360227 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||||||||| || | | | | |||||||||| | |||||||| Sbjct 360228 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 360287 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||||| | |||||| | || | | || ||||||||| ||||| || |||||| Sbjct 360288 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 360347 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||| | ||| |||||||| || ||||| || || | || ||||| || | Sbjct 360348 TCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTA 360407 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || |||||||| || || ||||| ||||| | | ||| || | || ||||| Sbjct 360408 GGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 360467 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || ||||| ||||| || ||||| || ||||| || || | || || ||| | | Sbjct 360468 CGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGT 360526 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 ||| || | ||| || ||||| | ||||||||||||||||| |||| | ||| | Sbjct 360527 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGACGGTTTTC 360586 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||| ||| | |||||| Sbjct 360587 AGTGCTAGTTATCCAGTTACAGAA 360610 >seq10805 Length=1012358 Score = 239 bits (264), Expect = 5e-58 Identities = 504/751 (67%), Gaps = 23/751 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 49478 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 49537 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || || || || | |||||| || || || ||||| Sbjct 49538 ATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTTGTGTAGAA 49597 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 49598 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAAGCACG 49657 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || ||||| || || | || | || |||| | ||| | || || || Sbjct 49658 TAGGTTCAGGGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 49717 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 49718 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGAGA 49777 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| ||| |||||||| | || || || | || || Sbjct 49778 CCAAAAGCGGTTAGCGGTGACCATCGAATAGGTTTCTTCGGCTTGCGTTGGGTTAAAAGC 49837 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | ||| ||| ||| | |||||| | || || Sbjct 49838 ACGGAATGT----GTTTG-----CACCATCACCA------------TCTTCAAATAAAGT 49876 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || || ||||||||||||||||| | || | || | || || ||||| Sbjct 49877 ATTTTCTACGGTAGCGCCATGAATGGCACATAGCAGAGCAGCGCCCAATACACCGGCAAC 49936 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| ||||| || |||||||| || || || ||||| | || | ||| | Sbjct 49937 TCCCATCATATGAAAGGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAA 49996 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| |||||||||||| Sbjct 49997 TCGAAATATCGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGG 50056 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || |||||||||||| | ||| || || Sbjct 50057 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCTATTGCATTATA 50116 Query 123526 AGGTC-TAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 ||||| ||| | || | || | |||||||| | | |||||||||||| |||| Sbjct 50117 AGGTCGCAATTGAACCGAG-CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTC 50175 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCA 123615 | || | || || | || ||||| |||| Sbjct 50176 CGAAAGCACCGTGGAGAGCAACAAAAGTCCA 50206 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 ||||| ||||||||||| || || ||||| || ||| ||||||||| || | | | | Sbjct 52488 CCATGGGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAA 52547 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || |||||||| | || || || |||||||| |||| || || || || || ||| | Sbjct 52548 TAGGCACAAGGAAAGAGCAATAGGCCAGACCAACCTACAAAAACGAATCGGTCCCTCCGT 52607 Query 123881 AACCAGTCGTCAAGAACATCAAA 123903 |||||||| || | || |||||| Sbjct 52608 AACCAGTCATCCATAATATCAAA 52630 >seq9227 Length=192999 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 ||||| ||||||||||| || || ||||| || ||| ||||||||| || | | | | Sbjct 29997 CCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAA 30056 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || |||||||| | || || || |||||||| |||| || || || || || ||| | Sbjct 30057 TAGGCACAAGGAAAGAGCAATAGGCCAGACCAACCTACAAAAACGAATCGGTCCCTCCGT 30116 Query 123881 AACCAGTCGTCAAGAACATCAAA 123903 |||||||| || | || |||||| Sbjct 30117 AACCAGTCATCCATAATATCAAA 30139 >seq6000 Length=492858 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | |||||||| ||||||||||| ||||| || ||||| || || Sbjct 348570 ACACCAATAGGGCCCATACCAGGACCACCACCTCCATGCGGAATGCAAAATGTTTTGTGG 348511 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCT 138297 | ||| ||||| || ||||| || ||| || || || ||| ||||| |||| Sbjct 348510 AGATTGAGATGGCAAACATCAGCTCCAATGTAACCAGGGCTTGTCAGACCGACCT 348456 >seq8585 Length=236491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 123557 AATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCAT 123616 ||||| | || ||||||||||| ||||| || | || || | || ||||| |||| Sbjct 27607 AATTGACAGATTATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAAAGTCCAA 27666 Query 123617 AGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAAC 123676 ||||| || | ||| |||| ||| || ||||||||||||||| ||||| || ||| Sbjct 27667 AGACCGCCTAATTGACACCAGCGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTAAC 27726 Query 123677 ATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTT 123732 | | | ||| | | | | |||| || || ||||| || ||||||||||| Sbjct 27727 AACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTTAAGAAGTT 27782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578890452985800