Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5989 111 2e-19 seq5924 105 8e-18 seq10828 100 3e-16 seq9360 96.9 4e-15 seq7036 91.5 2e-13 seq13915 86.0 7e-12 >seq5989 Length=495927 Score = 111 bits (122), Expect = 2e-19 Identities = 172/241 (71%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| ||||||||||||||| | ||| || | || | Sbjct 134852 CGGGATTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 134911 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || ||| | ||||| ||| |||| | || || || Sbjct 134912 G-TCCAAGGGAAGGTTGTAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAAT 134970 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||||| ||| | |||||| | | |||||||||| | ||| Sbjct 134971 TCACAAGGATGATATTGATTCTG-CTTTAAAACATACCATATGATGTCCCAAAGATGGTT 135029 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG--ATGTCCAGT 75364 || || ||| | || || || || |||||||| || ||||| || ||| |||| ||| Sbjct 135030 CACCCATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCAGGCATGTTTAGT 135089 Query 75365 T 75365 | Sbjct 135090 T 135090 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| ||||||||||||||| | ||| || | || | Sbjct 124309 CGGGATTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 124368 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || ||| | ||||| ||| |||| | || || || Sbjct 124369 G-TCCAAGGGACGGTTGTAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAAT 124427 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||||| | | |||||| | | |||||||||| | ||| Sbjct 124428 TCACAAGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTT 124487 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG--ATGTCCAGT 75364 || || ||| | || || || || |||||||| || ||||| || ||| |||| ||| Sbjct 124488 CACCCATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCAGGCATGTTTAGT 124547 Query 75365 T 75365 | Sbjct 124548 T 124548 >seq5924 Length=8700 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| ||||||||||||||| | ||| || | || | Sbjct 7757 CGGGATTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 7698 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || ||| | ||||| ||| |||| | || || || Sbjct 7697 G-TCCAAGGGAAGGTTGTAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAAT 7639 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||||| | | |||||| | | |||||||||| | ||| Sbjct 7638 TCACAAGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTT 7579 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG--ATGTCCAGT 75364 || || ||| | || || || || |||||||| || ||||| || ||| |||| ||| Sbjct 7578 CACCCATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCAGGCATGTTTAGT 7519 Query 75365 T 75365 | Sbjct 7518 T 7518 >seq10828 Length=125459 Score = 100 bits (110), Expect = 3e-16 Identities = 289/443 (65%), Gaps = 4/443 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| || || ||| | || ||||||| | || | ||| || || || || Sbjct 17484 GTGGAGTTCCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGGGT 17543 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||||| ||| ||||| || || ||||| || || ||| || || || ||| Sbjct 17544 GTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAGGCAATTGCTGGT 17603 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| ||||| || || | | | ||||| ||||||||||||||| Sbjct 17604 GAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 17663 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| || || || ||||| || | | ||| || || || || ||| Sbjct 17664 GTCGGTGCATCTAGAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAACGCTCCTTGCATT 17723 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAG 175534 || || | ||||| |||||||| || || | ||| | | |||| | | | | || Sbjct 17724 GTATTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGG--AG 17781 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 ||||| || ||||| || || |||| || || | || || |||||||| ||||| Sbjct 17782 GGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG 17841 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCC 175654 | | ||||| || | || ||||| || ||||| | | ||| || |||||| ||| Sbjct 17842 GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTTGATTCTGCCT 17901 Query 175655 TCCTTCGCCCGGGTCGTTTTGAT 175677 | | | || || ||||||||| Sbjct 17902 TATTGAGGCCTGGACGTTTTGAT 17924 >seq9360 Length=2047533 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 |||||||| | | ||| | |||||| | || || || || | | ||||| || | Sbjct 1277763 GAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACG 1277822 Query 65035 TGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAGCGCCTTTTTGCGT 65092 ||||| | || ||| | ||| | |||| | ||||| ||| | | | |||| Sbjct 1277823 TGGGCGTTAAATTGGATCGAC-----GGCTCGGAGACTTTCGCGGAGAGATTAATCGCGT 1277877 Query 65093 TTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGA 65152 |||| || |||||||| || |||||||| ||| || ||||| || | |||| | || | Sbjct 1277878 TTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCAAAA 1277937 Query 65153 AGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTC 65212 |||| || | ||||| || || |||||||| || | || || ||||||||||||| Sbjct 1277938 AGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGATGAGGGTC 1277997 Query 65213 TCCAC 65217 ||||| Sbjct 1277998 TCCAC 1278002 >seq7036 Length=357795 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||| | ||| | || ||| ||||| |||||||||| |||| | ||| |||| || Sbjct 206913 CGGGATTTTGACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAG 206854 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | |||| || || | ||||| ||| |||| || | || | Sbjct 206853 G--TCCAAGGAAAAGTTGTAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGA 206796 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| ||| ||||||||||||| | | |||||| | | |||||| ||| | || Sbjct 206795 TTCACAAGGATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGT 206736 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATG 75358 | | || ||| | || || || || |||||||| ||||||||| | ||| || Sbjct 206735 TTACCCATGCATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCAGGTG 206683 >seq13915 Length=807303 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 175385 CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCT 175444 ||||| || | ||||| ||| |||||||||||||||| || || || | ||| | | Sbjct 136815 CTGCCCCAGAGTTTGTTGAGTTGTTTGTTGGTGTGGGCGCATCCAGAGTGAGGGATTTGT 136874 Query 175445 TTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG 175504 |||| | ||| || |||||||||||| | |||||||| |||||||| |||| Sbjct 136875 TTGAGAAGGCCAAACCGAAGGCACCATGTATTGTGCTTATTGATGAAATTGATGCTGTGG 136934 Query 175505 GCAAG-CAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAAT 175563 | || || | | || || || || ||| || || ||||| || || |||||| Sbjct 136935 GGGAGACAGAGAGGAGCAGGGCTTAGAGGAGGAAACGATGAAAGAGAGCAGACTATTAAT 136994 Query 175564 CAACTACTCACCGAGATGGATGGCTTT 175590 || || | || || ||| |||||||| Sbjct 136995 CAGCTTTTGACTGAAATGAATGGCTTT 137021 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 175385 CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCT 175444 ||||| || | ||||| ||| ||||||||||||| || || || || | ||| | | Sbjct 459820 CTGCCTCAGAGTTTGTTGAGTTGTTTGTTGGTGTTGGCGCATCCAGAGTGAGGGATTTGT 459879 Query 175445 TTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG 175504 |||| | ||| || ||| |||||||| || |||||||| |||||||| |||| Sbjct 459880 TTGAGAAGGCCAAATCGAAGGCACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGG 459939 Query 175505 GCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562 | | || | | || || | | | | || ||| || || ||||| || || ||||| Sbjct 459940 GGAGACAGAGAGGAGCAGGGCTTGGAGG--AGGAAACGATGAAAGAGAGCAGACTATTAA 459997 Query 175563 TCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || | || || |||||||||||| Sbjct 459998 TCAGCTTTTGACTGAAATGGATGGCTTT 460025 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 175385 CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCT 175444 ||||| ||| ||||| ||| |||||||||||||||| || || || | ||| | | Sbjct 141423 CTGCCCCAAG-TTTGTTGAGTTGTTTGTTGGTGTGGGCGCATCCAGAGTGAGGGATTTGT 141481 Query 175445 TTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG 175504 |||| | ||| || |||||||||||| | |||||||| |||||||| |||| Sbjct 141482 TTGAGAAGGCCAAACCGAAGGCACCATGTATTGTGCTTATTGATGAAATTGATGCTGTGG 141541 Query 175505 GCAAG-CAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAAT 175563 | || || | | || || || || ||| || || ||||| || || |||||| Sbjct 141542 GGGAGACAGAGAGGAGCAGGGCTTAGAGGAGGAAACGATGAAAGAGAGCAGACTATTAAT 141601 Query 175564 CAACTACTCACCGAGATGGATGGCTTT 175590 || || | || || ||| |||||||| Sbjct 141602 CAGCTTTTGACTGAAATGAATGGCTTT 141628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596458377055200