Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq6848 641 4e-179 seq10805 417 9e-112 seq8585 95.1 1e-14 seq7100 87.8 2e-12 seq224 87.8 2e-12 seq6913 84.2 2e-11 >seq6848 Length=375620 Score = 641 bits (710), Expect = 4e-179 Identities = 738/989 (75%), Gaps = 3/989 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | || ||||| | |||||||| || | |||||||||||| | Sbjct 331158 CTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTT 331217 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || ||| | ||| | |||||| |||| || || |||||||||| ||| ||| Sbjct 331218 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCT-CTC 331275 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || ||||| || |||||||| || |||| ||||| | ||||| |||| Sbjct 331276 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 331335 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 331336 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 331395 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| |||||| | || || || ||||||| | || ||| Sbjct 331396 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 331455 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | ||||||||||||||||||||||| || || Sbjct 331456 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 331515 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| ||||||||||| ||||| |||||| || ||||| || || || || |||| || Sbjct 331516 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 331575 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | || || |||||||||| ||||| ||||||| ||||| || |||| Sbjct 331576 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 331635 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 |||| || || ||||||| |||| | || ||||| ||||||||||| || || ||||| | Sbjct 331636 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 331695 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | ||||| ||| | ||||| ||||| ||||| || ||| | || ||||||||||| | Sbjct 331696 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 331755 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||| || ||| | | | || || || || |||| ||||| || | Sbjct 331756 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 331815 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| || | Sbjct 331816 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 331875 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || |||||||||||||| ||| |||||||| || || || || || |||||||| | Sbjct 331876 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 331935 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || ||||||||||| || | || | ||| ||||| |||| Sbjct 331936 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 331995 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 || | || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 331996 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 332055 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 ||||||| ||| || |||| || ||| || |||||||||||||||||||| ||||| | Sbjct 332056 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 332115 Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCT 166755 | || |||||||| || ||||| |||||| Sbjct 332116 CTCATAACTTCCCTCTAGACCTAGCTGCT 332144 Score = 641 bits (710), Expect = 4e-179 Identities = 738/989 (75%), Gaps = 3/989 (0%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | || ||||| | |||||||| || | |||||||||||| | Sbjct 360611 CTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTT 360552 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || ||| | ||| | |||||| |||| || || |||||||||| ||||||| Sbjct 360551 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 360493 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || ||||| || |||||||| || |||| ||||| | ||||| |||| Sbjct 360492 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 360433 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 360432 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 360373 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| |||||| | || || || ||||||| | || ||| Sbjct 360372 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 360313 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | ||||||||||||||||||||||| || || Sbjct 360312 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 360253 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| ||||||||||| ||||| ||||| | | ||||| || || || || |||| || Sbjct 360252 GTCTGGGTATGCGTCCTTGGATTGCTGTTGAT-ATTCAGCTCCTGTTGCAGCAGCGACTG 360194 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | || || |||||||||| ||||| ||||||| ||||| || |||| Sbjct 360193 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 360134 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 |||| || || ||||||| |||| | || ||||| ||||||||||| || || ||||| | Sbjct 360133 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 360074 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | ||||| ||| | ||||| ||||| ||||| || ||| | || ||||||||||| | Sbjct 360073 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 360014 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||| || ||| | | | || || || || |||| ||||| || | Sbjct 360013 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 359954 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| || | Sbjct 359953 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 359894 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || |||||||||||||| ||| |||||||| || || || || || |||||||| | Sbjct 359893 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 359834 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || ||||||||||| || | || | ||| ||||| |||| Sbjct 359833 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 359774 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 || | || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 359773 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 359714 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 ||||||| ||| || |||| || ||| || |||||||||||||||||||| ||||| | Sbjct 359713 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 359654 Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCT 166755 | || |||||||| || ||||| |||||| Sbjct 359653 CTCATAACTTCCCTCTAGACCTAGCTGCT 359625 >seq10805 Length=1012358 Score = 417 bits (462), Expect = 9e-112 Identities = 530/729 (73%), Gaps = 0/729 (0%) Strand=Plus/Minus Query 167302 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTT 167361 ||| ||||||| || |||||||| || || | || || ||||||||| | || || ||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 167362 GAACTTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATT 167421 |||||||||||| | || | || || || ||||| || || ||||||| ||| ||| Sbjct 50146 GAACTTGCTCGCTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATT 50087 Query 167422 GCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCC 167481 ||||| || ||| || ||||| | ||||| || ||||| | ||||||||||| Sbjct 50086 GCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 50027 Query 167482 CCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAAC 167541 || || || || || || || || |||||| |||| || ||||||| || || || Sbjct 50026 CCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAAT 49967 Query 167542 TGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTT 167601 |||||| |||| || |||||||||||||| || || ||| | |||| | ||| |||| Sbjct 49966 TGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTA 49907 Query 167602 TCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAAC 167661 | ||| || ||||| | ||| ||||| |||||||| | |||||||||||| |||||| Sbjct 49906 TGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAAC 49847 Query 167662 ACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAAC 167721 || || || || | | || || | ||||| || ||||| ||||| || || ||| Sbjct 49846 ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAAC 49787 Query 167722 CGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTT 167781 || || |||||||| ||||| || ||||||| ||| ||||| ||| | ||||||||| Sbjct 49786 CGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 49727 Query 167782 ATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCT 167841 |||||||| || || || | || | |||| | |||| | | || || || Sbjct 49726 ATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCC 49667 Query 167842 CTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAG 167901 || || || |||||||| || |||||||| || || ||| | || ||||| ||||| || Sbjct 49666 CTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAA 49607 Query 167902 TTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCA 167961 ||||| |||||||| || ||||| || ||| | || || ||| |||| || ||| | || Sbjct 49606 TTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCG 49547 Query 167962 CCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAAC 168021 || ||||| |||||||| ||| || | ||||| ||||| ||||| || || || ||| Sbjct 49546 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAAC 49487 Query 168022 GCACTATAA 168030 || || ||| Sbjct 49486 GCTCTTTAA 49478 >seq8585 Length=236491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 167177 AGGGTGCGAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTT 167236 ||| ||| ||||| | || || |||||| ||||| || || | | | ||||||| Sbjct 27789 AGGCTGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTT 27731 Query 167237 TACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGG 167296 | | | ||||||||||||||| | ||||| ||||| | ||| ||| | || | Sbjct 27730 TGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCG 27671 Query 167297 GACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGAC 167356 | || ||| ||||||| || |||||||| || || | || || |||||||| | | | Sbjct 27670 GTCTTTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATAATCTGTC 27611 Query 167357 AGTTTGAACTTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTC 167416 | || ||||| ||| | | ||| | | || || ||||| || || |||| || || Sbjct 27610 AATTCAAACTTACTCACTTTATTTGCA-----CCTTATAATGCAATAGCATTCTTTGCTC 27556 Query 167417 CTATTGCTGTCTTCGTT 167433 | |||| ||| || ||| Sbjct 27555 CAATTGTTGTTTTTGTT 27539 >seq7100 Length=3288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 ||||| |||||| |||||||||||||||||||||||| |||||| ||||| |||||| | Sbjct 1319 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGGAGTTCGACT 1378 Query 18069 CCGCTATTCTCCA 18081 | ||| |||||| Sbjct 1379 CTCCTAGTCTCCA 1391 >seq224 Length=762960 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||| ||| Sbjct 591127 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 591068 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 591067 CCTACTTGGGGAG 591055 >seq6913 Length=1432529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 167503 ATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCAT 167562 || || || ||| |||| || ||||||| | | || |||||| | || || |||||| Sbjct 164018 ATATTTCGGTTCATCCTTTTTTTCCAAGGGTCTTATAAGTGGACATTAAACCCCTTTCAT 163959 Query 167563 ATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACA 167622 |||||||| || || ||| | | |||| || ||| | ||| || ||||| ||| Sbjct 163958 ATGATGGGAGTTGCTGGTGTATTAGGTGCTGTTCAGCTATGTGCTATTCATGGCACTACT 163899 Query 167623 GTAGAGAATACTTTGTATGAAGATGGTGA 167651 |||| |||||||| | |||||||||||| Sbjct 163898 ATAGAAAATACTTTATTTGAAGATGGTGA 163870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561143362326000