Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq6848 594 1e-165 seq8117 82.4 2e-11 >seq6848 Length=375620 Score = 594 bits (658), Expect = 1e-165 Identities = 732/994 (74%), Gaps = 5/994 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||||||||| |||| |||||| Sbjct 331150 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTT 331209 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||| ||||| Sbjct 331210 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 331268 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||| | ||||| ||||| ||||| || |||||||||||||| ||||| ||||| || || Sbjct 331269 TGCT-CTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 331327 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || || |||||||| | | |||| | || || || | ||||| Sbjct 331328 TGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT 331387 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || |||| |||||||| || |||| |||||| | ||||||||||| |||||| | Sbjct 331388 TTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 331447 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 331448 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 331507 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 331508 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 331567 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 ||||||||| || ||| | |||| ||| | || ||||| |||||| ||||| ||||| Sbjct 331568 AGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCC 331627 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||||||| | || ||||||||||| || ||||| || Sbjct 331628 TCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 331687 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||| | || || || || ||||| || || || | ||| || Sbjct 331688 TATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 331747 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || |||||| | | | | ||||| || ||||| ||| Sbjct 331748 TATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 331807 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| || |||| |||||||||||||| || |||||||| || || || || || || Sbjct 331808 TAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGG 331867 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 331868 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 331926 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| || || |||||||| || || || || ||||||||| || | || | || |||| Sbjct 331927 TCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTA 331986 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||||| |||||||| || || |||||||| | ||||||| ||| || || Sbjct 331987 TGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG 332046 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || ||| |||||||||||| | |||||||| |||||||| | || || ||||| | Sbjct 332047 TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 332106 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | || ||||| ||||||||||| || || || || Sbjct 332107 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 332140 Score = 594 bits (658), Expect = 1e-165 Identities = 732/994 (74%), Gaps = 5/994 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||||||||| |||| |||||| Sbjct 360619 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTT 360560 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||| ||||| Sbjct 360559 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 360501 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| ||||| || |||||||||||||| ||||| ||||| || || Sbjct 360500 TGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 360441 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || || |||||||| | | |||| | || || || | ||||| Sbjct 360440 TGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT 360381 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || |||| |||||||| || |||| |||||| | ||||||||||| |||||| | Sbjct 360380 TTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 360321 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 360320 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 360261 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| ||||| | | || || ||||| || || Sbjct 360260 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGAT-ATTCAGCTCCTGTTGCAGC 360202 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 ||||||||| || ||| | |||| ||| | || ||||| |||||| ||||| ||||| Sbjct 360201 AGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCC 360142 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||||||| | || ||||||||||| || ||||| || Sbjct 360141 TCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCT 360082 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||| | || || || || ||||| || || || | ||| || Sbjct 360081 TATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 360022 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || |||||| | | | | ||||| || ||||| ||| Sbjct 360021 TATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 359962 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| || |||| |||||||||||||| || |||||||| || || || || || || Sbjct 359961 TAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGG 359902 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 359901 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 359843 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| || || |||||||| || || || || ||||||||| || | || | || |||| Sbjct 359842 TCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTA 359783 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||||| |||||||| || || |||||||| | ||||||| ||| || || Sbjct 359782 TGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG 359723 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || ||| |||||||||||| | |||||||| |||||||| | || || ||||| | Sbjct 359722 TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 359663 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | || ||||| ||||||||||| || || || || Sbjct 359662 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 359629 >seq8117 Length=261383 Score = 82.4 bits (90), Expect = 2e-11 Identities = 217/322 (67%), Gaps = 21/322 (7%) Strand=Plus/Plus Query 42768 TTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAAC-ATAACATTCTTATGCATC 42826 ||||||||| |||||||||||| | || ||| ||||||| | | ||| ||| || || Sbjct 21631 TTCCGGTACTTTCAACTTCATGATTGTATTCGAGGCTGAGCTCCATCATCCTTGTGGATT 21690 Query 42827 CTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGG--TCGTTGTTCTCAGCTATGCA 42884 | ||||| ||| | || ||| || ||||| | | | |||| || ||||| Sbjct 21691 CATTCCACATG--TTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCA---ATGCA 21745 Query 42885 TGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTA 42944 ||| | || |||||| | | | || ||||| || ||||| ||| | || | Sbjct 21746 CGGTTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGA 21805 Query 42945 TGGCTACA-AGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACT 43003 | |||| |||| |||| |||| | || ||||| | ||||| | || |||| ||| | Sbjct 21806 AAGATACAGAGTT-GGTCCAGAGAAAGAAACTTACGATATTGTATCTGCTCATGTTTATT 21864 Query 43004 TTGGACGGCTTAT-----CTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 || ||||||| ||||| |||||| | |||| | ||| || ||||| || | Sbjct 21865 TT----GGCTTATTGATACTTCCGATATGC-TGGTTTCAGCAATTTTCATTCTTTACATT 21919 Query 43058 TCTTTCTTGCCGCTTGGCCCGT 43079 |||| || | ||||||||||| Sbjct 21920 TCTTCCTAGATGCTTGGCCCGT 21941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143507378098420