Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq6848 473 4e-129 >seq6848 Length=375620 Score = 473 bits (524), Expect = 4e-129 Identities = 702/986 (71%), Gaps = 7/986 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 332140 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 332081 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 332080 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 332021 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| |||| ||||| | || || | | Sbjct 332020 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 331961 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || |||||||| | |||||| || || ||| Sbjct 331960 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 331901 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || ||||| ||||| || |||||||| || Sbjct 331900 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 331841 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || ||| || | | ||||| ||||| Sbjct 331840 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 331781 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 331780 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 331721 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| |||||||||||||| || || || || || || |||||||| Sbjct 331720 CCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 331661 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| |||||||||||||| || |||||||| |||||| |||||| ||||| Sbjct 331660 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 331601 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| || || | ||||| || || ||||| | | || |||| |||||||||| Sbjct 331600 CCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAACA 331541 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || || Sbjct 331540 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 331481 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 331480 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 331421 Query 26597 TCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| |||||||||||||| | || || || ||| | Sbjct 331420 TCATCAACGGATGCC-GCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGT 331362 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || || ||||| || || Sbjct 331361 AGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 331302 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || || || |||||||| || || | || |||||||| | ||||| ||| | || Sbjct 331301 ACGAATACCGTCAATATCTACTGGAGGAG-AGCAATGAAGGCGATAATAAATACA-GAAG 331244 Query 26775 TGGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 | || | | | ||| |||| ||||| | || || ||||| || | || |||||||| Sbjct 331243 TTGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCAACCAATGTAAAGACGGTTT 331185 Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || | ||| | ||| || Sbjct 331184 TCAGTGCTAGTTATCCAGTTACAGAA 331159 Score = 473 bits (524), Expect = 4e-129 Identities = 702/986 (71%), Gaps = 7/986 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 359629 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 359688 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 359689 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 359748 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| |||| ||||| | || || | | Sbjct 359749 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 359808 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || |||||||| | |||||| || || ||| Sbjct 359809 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 359868 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || ||||| ||||| || |||||||| || Sbjct 359869 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 359928 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || ||| || | | ||||| ||||| Sbjct 359929 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 359988 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 359989 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 360048 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| |||||||||||||| || || || || || || |||||||| Sbjct 360049 CCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 360108 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| |||||||||||||| || |||||||| |||||| |||||| ||||| Sbjct 360109 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 360168 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| || || | ||||| || || ||||| | | || |||| |||| ||||| Sbjct 360169 CCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATAT-CAACA 360227 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || || Sbjct 360228 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 360287 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 360288 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 360347 Query 26597 TCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| |||||||||||||| | || || || ||| | Sbjct 360348 TCATCAACGGATGCC-GCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGT 360406 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || || ||||| || || Sbjct 360407 AGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 360466 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || || || |||||||| || || || || |||||||| | ||||| ||| | || Sbjct 360467 ACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAG 360525 Query 26775 TGGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 | || | | | ||| |||| ||||| | || || ||||| || | || |||||||| Sbjct 360526 TTGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCAACCAATGTAAAGACGGTTT 360584 Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || | ||| | ||| || Sbjct 360585 TCAGTGCTAGTTATCCAGTTACAGAA 360610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147685837896800