Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq6848 506 6e-139 >seq6848 Length=375620 Score = 506 bits (560), Expect = 6e-139 Identities = 713/992 (72%), Gaps = 11/992 (1%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 332144 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 332085 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | |||| || ||||||||| ||| ||| || ||| | | || ||||| Sbjct 332084 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 332025 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| | ||| ||||||||||| ||||| | | || Sbjct 332024 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 331965 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | || ||||| |||| | ||| |||||| Sbjct 331964 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 331905 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| |||||||| ||||||||||| ||||| Sbjct 331904 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 331845 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || || |||||| |||| ||||| || Sbjct 331844 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 331785 Query 40889 CCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACC 40945 || || | | |||| || ||||| || ||||||||| || | | || || Sbjct 331784 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 331728 Query 40946 AAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTG 41005 || || || || ||||| | ||| |||||||||||||| || |||||||| || || || Sbjct 331727 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 331668 Query 41006 GAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGA 41065 ||| |||| |||||||||||| || ||| |||||||| ||||||||||||||| ||| Sbjct 331667 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 331608 Query 41066 ACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTA 41125 || ||||||| ||| || | ||||| ||||| ||||||| | ||||||| || Sbjct 331607 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 331548 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 ||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 331547 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 331488 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| ||||| || | ||| ||||| | ||||| || | ||| || ||||| ||||| Sbjct 331487 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 331428 Query 41246 TAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 || ||| || || | | ||||| ||||||| || ||||| ||||| | || || || Sbjct 331427 TAACCATTCATCAACGGATGCCG-CTTCCCATATCGGGTAAAAATGCAAACCTATAGCTG 331369 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | || ||||| ||||||||||| || || | || || || |||| Sbjct 331368 CAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAA 331309 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-A 41423 | || ||||| || || || |||||||| || || | || || |||||||| || || | Sbjct 331308 CAGGTTCACGAATACCGTCAATATCTACTGGAGGAG-AGCAATGAAGGCGATAATAAATA 331250 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 || | || || || | ||| | || ||||| | |||||||||||||| | ||| || Sbjct 331249 CA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGA 331191 Query 41484 CGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || |||||||| | ||||||||| || Sbjct 331190 CGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 331159 Score = 506 bits (560), Expect = 6e-139 Identities = 713/992 (72%), Gaps = 11/992 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 359625 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 359684 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | |||| || ||||||||| ||| ||| || ||| | | || ||||| Sbjct 359685 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 359744 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| | ||| ||||||||||| ||||| | | || Sbjct 359745 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 359804 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | || ||||| |||| | ||| |||||| Sbjct 359805 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 359864 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| |||||||| ||||||||||| ||||| Sbjct 359865 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 359924 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || || |||||| |||| ||||| || Sbjct 359925 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 359984 Query 40889 CCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACC 40945 || || | | |||| || ||||| || ||||||||| || | | || || Sbjct 359985 CCTGATCAAACTAGAGG--TTACCAAGG-AACCATGCATAGCACTGAATAGGGAGCCGCC 360041 Query 40946 AAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTG 41005 || || || || ||||| | ||| |||||||||||||| || |||||||| || || || Sbjct 360042 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 360101 Query 41006 GAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGA 41065 ||| |||| |||||||||||| || ||| |||||||| ||||||||||||||| ||| Sbjct 360102 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 360161 Query 41066 ACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTA 41125 || ||||||| ||| || | ||||| ||||| ||||||| | ||||||| || Sbjct 360162 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 360221 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 | | ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 360222 T-CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 360280 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| ||||| || | ||| ||||| | ||||| || | ||| || ||||| ||||| Sbjct 360281 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 360340 Query 41246 TAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 || ||| || || | | |||| |||||||| || ||||| ||||| | || || || Sbjct 360341 TAACCATTCATCAACGGATGCC-GCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTG 360399 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | || ||||| ||||||||||| || || | || || || |||| Sbjct 360400 CAGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAA 360459 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-A 41423 | || ||||| || || || |||||||| || || || || || |||||||| || || | Sbjct 360460 CAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATA 360519 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 || | || || || | ||| | || ||||| | |||||||||||||| | ||| || Sbjct 360520 CA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGA 360578 Query 41484 CGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || |||||||| | ||||||||| || Sbjct 360579 CGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 360610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143676948059610