Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq6848 571 7e-158
>seq6848
Length=375620
Score = 571 bits (632), Expect = 7e-158
Identities = 698/950 (73%), Gaps = 7/950 (1%)
Strand=Plus/Minus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||
Sbjct 332144 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 332085
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474
|| | |||| || || ||||| ||| ||| || || |||| |||||
Sbjct 332084 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAAC 332028
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534
|| ||||||||||| |||||||| || | |||||| |||||||| | ||| | ||
Sbjct 332027 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGC 331968
Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594
|||||||||||| | || ||||| | ||||| |||||||| || | | | || ||
Sbjct 331967 AGTGAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATT 331908
Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654
||||||| ||||| ||||||||||| || || || || || |||||||| || || ||
Sbjct 331907 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATT 331848
Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714
||||| ||||| ||||| ||||| ||||||| || || || | || || ||
Sbjct 331847 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGT 331788
Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774
||| ||||| | | ||| || || | ||||| ||||||||||| || || || || ||
Sbjct 331787 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 331728
Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834
||||||||| ||||| || | ||| ||||||||||||||||||||||||||||| || ||
Sbjct 331727 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 331668
Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894
||| || | |||| |||| ||||||||||| || || |||||||| | ||||| |||
Sbjct 331667 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 331608
Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954
|||||||||| || |||| |||||| ||||| ||||| | || ||||| || ||
Sbjct 331607 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 331548
Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014
||| ||| ||||||||||||||||| |||||| || ||||||||||| ||||||
Sbjct 331547 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 331488
Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074
||| | | || | | |||||| | || | || | |||| || ||||| ||
Sbjct 331487 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 331428
Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134
||||| ||||| | | ||| |||||||| || || || || || | ||| || ||
Sbjct 331427 TAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 331368
Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194
||| |||||| || ||||||||||| || ||||| || || | || || || | |||
Sbjct 331367 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 331308
Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254
|||||| | ||||| || ||||| |||||||| | |||||||| || || || ||
Sbjct 331307 AGGTTCACGAATACCGTCAATATCTACTGGAGGAG-AGCAATGAAGGCGATAATAAATAC 331249
Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304
|| | ||| | | || ||| |||||||| ||||| ||||||||||
Sbjct 331248 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAA 331199
Score = 571 bits (632), Expect = 7e-158
Identities = 698/950 (73%), Gaps = 7/950 (1%)
Strand=Plus/Plus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||
Sbjct 359625 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 359684
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474
|| | |||| || || ||||| ||| ||| || || |||| |||||
Sbjct 359685 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAAC 359741
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534
|| ||||||||||| |||||||| || | |||||| |||||||| | ||| | ||
Sbjct 359742 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGC 359801
Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594
|||||||||||| | || ||||| | ||||| |||||||| || | | | || ||
Sbjct 359802 AGTGAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATT 359861
Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654
||||||| ||||| ||||||||||| || || || || || |||||||| || || ||
Sbjct 359862 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATT 359921
Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714
||||| ||||| ||||| ||||| ||||||| || || || | || || ||
Sbjct 359922 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGT 359981
Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774
||| ||||| | | ||| || || | ||||| ||||||||||| || || || || ||
Sbjct 359982 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 360041
Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834
||||||||| ||||| || | ||| ||||||||||||||||||||||||||||| || ||
Sbjct 360042 GAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 360101
Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894
||| || | |||| |||| ||||||||||| || || |||||||| | ||||| |||
Sbjct 360102 GAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 360161
Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954
|||||||||| || |||| |||||| ||||| ||||| | || ||||| || ||
Sbjct 360162 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATA 360221
Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014
| | ||| ||||||||||||||||| |||||| || ||||||||||| ||||||
Sbjct 360222 T-CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 360280
Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074
||| | | || | | |||||| | || | || | |||| || ||||| ||
Sbjct 360281 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 360340
Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134
||||| ||||| | | ||| |||||||| || || || || || | ||| || ||
Sbjct 360341 TAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 360400
Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194
||| |||||| || ||||||||||| || ||||| || || | || || || | |||
Sbjct 360401 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 360460
Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254
|||||| | ||||| || ||||| |||||||| || |||||||| || || || ||
Sbjct 360461 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 360520
Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304
|| | ||| | | || ||| |||||||| ||||| ||||||||||
Sbjct 360521 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAA 360570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566841499781400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |