Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3221 118 2e-21 seq7271 113 8e-20 seq5889 84.2 4e-11 >seq3221 Length=646307 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | || | |||||| || |||||||| | ||||| | Sbjct 219724 CGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCG 219783 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||||||||| || ||||| |||||||| || || || ||||| || Sbjct 219784 TCTTCCAATTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTG 219843 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| ||| ||||| ||| ||| || || ||||| || Sbjct 219844 TCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATC 219903 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || ||||| Sbjct 219904 GTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 219938 Score = 113 bits (124), Expect = 8e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | || | |||||| ||||||||||| | ||||| | Sbjct 261360 CGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCG 261419 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| ||||| || ||||| |||||||| || || || || || || Sbjct 261420 TCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTG 261479 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| ||| ||||| ||| ||| || || ||||| || Sbjct 261480 TCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATC 261539 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || ||||| Sbjct 261540 GTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 261574 >seq7271 Length=339586 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | |||||| |||| || | || | || || ||||||||||| Sbjct 55452 ATACCACCCCTAAGTCGAAGGACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCA 55393 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | ||||| || ||||| || | ||||| |||||||| Sbjct 55392 GCAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCAGGT 55333 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||||| ||| ||| || ||||| ||| Sbjct 55332 GGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCA 55273 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || || || || ||||| ||||| |||||||| Sbjct 55272 ACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 55223 Score = 113 bits (124), Expect = 8e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| |||||| |||||||| || | || || || || || || || ||||| || Sbjct 98547 ATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTT 98488 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||||| ||| | ||| ||| || ||||| ||||||||| | || || Sbjct 98487 GTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGAT 98428 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| || || ||||| |||||||| |||||| Sbjct 98427 AGTTTTACCAGTCAGGGTTTTCACAAATATCTGCATT 98391 Score = 109 bits (120), Expect = 1e-18 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | |||||| | || ||||| || ||||| || |||| ||| || ||||| || Sbjct 99765 TTAAAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTA 99706 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| | || || | ||| || | || || ||||||||||| || ||||| ||||| Sbjct 99705 GTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATC 99646 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 ||||| || ||||| || || || ||||| | || | ||| ||| || || ||| Sbjct 99645 TGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACT 99586 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| || || || || ||||| || || | || || || || || |||||| Sbjct 99585 CTCAACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCACGAAAATCTGCATT 99531 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | || | ||| || || || ||||| | | || | | | Sbjct 56121 CGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCA 56062 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| |||||||| ||||| |||||||||||||| || || || || || Sbjct 56061 TCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCCTTG 56002 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | ||| || || || || ||||| || | ||||||| Sbjct 56001 TCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATA 55942 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || ||||| ||||| || ||||| Sbjct 55941 GTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 55907 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | || | ||| || |||||| ||||||| | || || | Sbjct 99062 CGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCA 99003 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || | ||||| || ||||| || || ||||| || Sbjct 99002 TCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTG 98943 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||||||| ||| ||||||||||| || || Sbjct 98942 TCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATG 98883 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| |||||||| Sbjct 98882 GTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 98848 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| || || ||| || Sbjct 98855 ATTTGCATACCACCACGAAGGCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTG 98796 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | ||| |||| || ||||| |||||||| | |||||||||| Sbjct 98795 TAGTCAGCAAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGA 98736 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || || || || || |||| || | ||| || || || || Sbjct 98735 TCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCAGAG 98676 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || | ||||||||| ||||| || || ||||| ||||| || ||||| Sbjct 98675 CTTTCAACCTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 98620 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || ||||| || |||||||| ||||| ||||| || || || || Sbjct 95134 ATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTT 95075 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | || | ||| || || || || ||||| || | |||||| Sbjct 95074 GTCCTGAATCTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTAT 95015 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || ||||| ||||| || ||||| Sbjct 95014 AGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 94979 >seq5889 Length=513596 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | | ||| || || ||||| |||||||| || ||||| || Sbjct 196807 TGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATC 196748 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | || || || ||||| ||| ||||| ||||| || || || || Sbjct 196747 TTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCG 196688 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 196687 GTTAGGGTTTTCACGAAGATCTGCAT 196662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899486670682800