Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq3221 118 2e-21
seq7271 113 8e-20
seq5889 84.2 4e-11
>seq3221
Length=646307
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || || || || | || | |||||| || |||||||| | ||||| |
Sbjct 219724 CGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCG 219783
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || ||||||||||||||||| || ||||| |||||||| || || || ||||| ||
Sbjct 219784 TCTTCCAATTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTG 219843
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| || | ||| ||| ||||| ||| ||| || || ||||| ||
Sbjct 219844 TCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATC 219903
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||| ||||| || || || |||||
Sbjct 219904 GTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 219938
Score = 113 bits (124), Expect = 8e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || || || || | || | |||||| ||||||||||| | ||||| |
Sbjct 261360 CGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCG 261419
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || ||||||||||| ||||| || ||||| |||||||| || || || || || ||
Sbjct 261420 TCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTG 261479
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| || | ||| ||| ||||| ||| ||| || || ||||| ||
Sbjct 261480 TCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATC 261539
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||| ||||| || || || |||||
Sbjct 261540 GTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 261574
>seq7271
Length=339586
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| || | |||||| |||| || | || | || || |||||||||||
Sbjct 55452 ATACCACCCCTAAGTCGAAGGACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCA 55393
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | | ||| || | ||||| || ||||| || | ||||| ||||||||
Sbjct 55392 GCAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCAGGT 55333
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || || || || |||| ||||| ||| ||| || ||||| |||
Sbjct 55332 GGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCA 55273
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||| || || || || || ||||| ||||| ||||||||
Sbjct 55272 ACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 55223
Score = 113 bits (124), Expect = 8e-20
Identities = 119/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| |||| |||||| |||||||| || | || || || || || || || ||||| ||
Sbjct 98547 ATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTT 98488
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|| || ||||||| ||| | ||| ||| || ||||| ||||||||| | || ||
Sbjct 98487 GTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGAT 98428
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||||||| || || ||||| |||||||| ||||||
Sbjct 98427 AGTTTTACCAGTCAGGGTTTTCACAAATATCTGCATT 98391
Score = 109 bits (120), Expect = 1e-18
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186
||| | |||||| | || ||||| || ||||| || |||| ||| || ||||| ||
Sbjct 99765 TTAAAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTA 99706
Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246
||| | || || | ||| || | || || ||||||||||| || ||||| |||||
Sbjct 99705 GTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATC 99646
Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306
||||| || ||||| || || || ||||| | || | ||| ||| || || |||
Sbjct 99645 TGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACT 99586
Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|||||| || || || || ||||| || || | || || || || || ||||||
Sbjct 99585 CTCAACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCACGAAAATCTGCATT 99531
Score = 104 bits (114), Expect = 4e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| ||| | || | ||| || || || ||||| | | || | | |
Sbjct 56121 CGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCA 56062
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | |||||| |||||||| ||||| |||||||||||||| || || || || ||
Sbjct 56061 TCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCCTTG 56002
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || |||| || | ||| || || || || ||||| || | |||||||
Sbjct 56001 TCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATA 55942
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| ||||| || || ||||| ||||| || |||||
Sbjct 55941 GTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 55907
Score = 104 bits (114), Expect = 4e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| || | || | ||| || |||||| ||||||| | || || |
Sbjct 99062 CGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCA 99003
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || ||||| || | ||||| || ||||| || || ||||| ||
Sbjct 99002 TCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTG 98943
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | ||| ||||||||| ||| ||||||||||| || ||
Sbjct 98942 TCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATG 98883
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || ||||| ||||||||
Sbjct 98882 GTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 98848
Score = 102 bits (112), Expect = 1e-16
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | ||||| |||| || | |||| || || ||| ||
Sbjct 98855 ATTTGCATACCACCACGAAGGCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTG 98796
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | | || | ||| |||| || ||||| |||||||| | ||||||||||
Sbjct 98795 TAGTCAGCAAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGA 98736
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
||||| || || || || || || || || |||| || | ||| || || || ||
Sbjct 98735 TCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCAGAG 98676
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || | ||||||||| ||||| || || ||||| ||||| || |||||
Sbjct 98675 CTTTCAACCTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 98620
Score = 93.3 bits (102), Expect = 8e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | |||||| || ||||| || |||||||| ||||| ||||| || || || ||
Sbjct 95134 ATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTT 95075
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|| || || || | || | ||| || || || || ||||| || | ||||||
Sbjct 95074 GTCCTGAATCTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTAT 95015
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||||||| || || ||||| ||||| || |||||
Sbjct 95014 AGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 94979
>seq5889
Length=513596
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||||||||| || || | | ||| || || ||||| |||||||| || ||||| ||
Sbjct 196807 TGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATC 196748
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | || || || ||||| ||| ||||| ||||| || || || ||
Sbjct 196747 TTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCG 196688
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || || |||||
Sbjct 196687 GTTAGGGTTTTCACGAAGATCTGCAT 196662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899486670682800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |