Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3221 114 2e-20 seq7271 107 3e-18 seq9360 84.2 4e-11 >seq3221 Length=646307 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| |||||||| || | || | || |||| ||||||||||| || Sbjct 261377 AGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCGTCTTCCAATTGTTTTCC 261436 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 |||||| || ||||| ||||| || ||||| || || || || ||||| || || || Sbjct 261437 AGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTGTCTTGGATCTTGGCCTT 261496 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || |||||||| || || || ||||| || || || ||||||| || Sbjct 261497 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 261556 Query 172052 TTTAATGAATATCTGCAT 172069 ||| | ||| |||||||| Sbjct 261557 TTTGACGAAGATCTGCAT 261574 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| || ||||| || | || | || |||| ||||||||||| || Sbjct 219741 AGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCCAATTGTTTTCC 219800 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||||| || ||||| ||||| || ||||| || ||||| || ||||| || || || Sbjct 219801 GGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTT 219860 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || |||||||| || || || ||||| || || || ||||||| || Sbjct 219861 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 219920 Query 172052 TTTAATGAATATCTGCAT 172069 ||| | ||| |||||||| Sbjct 219921 TTTGACGAAGATCTGCAT 219938 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | || | ||| || ||| |||||||| | Sbjct 290125 ACCACCACGAAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGC 290184 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | || || |||||||| || | ||||| || || ||||| Sbjct 290185 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 290244 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || |||||| ||||||||||| || || Sbjct 290245 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCAC 290304 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || ||||| || || || | ||||||||||| Sbjct 290305 CTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 290352 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | ||| | || | ||| || || |||||||| Sbjct 290351 ATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCC 290410 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | ||||| ||||| || || || | ||| || || ||| Sbjct 290411 GCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGT 290470 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| || ||||| || || ||||| || Sbjct 290471 GGAATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 290530 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| ||||| ||||| | || |||| ||||||||||| Sbjct 290531 ACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 290580 >seq7271 Length=339586 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || | || | ||||||||||| ||| || ||||| || || Sbjct 99762 AAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTC 99703 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| || | || |||| || || || |||||||| || ||||| || || || Sbjct 99702 AGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGG 99643 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || || || |||||| || |||||| || || ||||| || Sbjct 99642 AGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTC 99583 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || |||||||| || || ||||| || | ||| ||||||||| Sbjct 99582 AACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCACGAAAATCTGCATT 99531 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || || || | ||| | ||| || |||||| || || Sbjct 99077 ATACCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCG 99018 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | || ||||||||||| || | ||||| |||||||| Sbjct 99017 GCGAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGC 98958 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| ||||| |||||||| || || Sbjct 98957 GGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 98898 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||| || ||||| | || |||| || || ||||| Sbjct 98897 ACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 98848 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | ||| || ||| ||||||||| Sbjct 99305 ATGCCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCT 99246 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | | || || | || || ||||||||||| || ||||| ||||| || Sbjct 99245 GC-AAGGGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGG 99187 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || |||||||| || || || |||||| ||| || ||||| ||| Sbjct 99186 AGGAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTC 99127 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || ||||| || || || | || |||||||| Sbjct 99126 CACCTCCAAAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 99076 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||| | ||||| || ||||| ||| Sbjct 95436 ATACCACCACGGAGGCGAAGAACCAAGTGGAGAGTGGATTCTTTCTGGATGTTATAGTCT 95377 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | || || ||||||||||| | ||||| || || ||| Sbjct 95376 GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGT 95317 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| ||| ||||| || || || || |||| Sbjct 95316 GGGATACCCTCCTTGTCTTGAATTTTGGCTTTCACATTGTCAATGGTGTCAGAGCTTTCT 95257 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| || || | ||||| | || |||||||| Sbjct 95256 ACCTCAAGAGTGATTGTTTTTCCTGTCAGGGTTTTCACAAAAATCTGCAT 95207 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| | || || | ||||||||| ||||| || | || || ||||| ||||| || ||| Sbjct 98552 CGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCT 98493 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 || || || || ||||| ||| ||||| || || || || || ||||| | Sbjct 98492 TCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAG 98433 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| | ||||| | |||||||||||| Sbjct 98432 GTGATAGTTTTACCAGTCAGGGTTTTCACAAATATCTGCATT 98391 Score = 84.2 bits (92), Expect = 4e-11 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || || || | || | ||| || || |||||||| Sbjct 94752 ATGCCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCG 94693 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | |||||||||||||| || | ||||| || || ||| Sbjct 94692 GCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 94633 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| |||||| || ||||| || ||| Sbjct 94632 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCA 94573 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT--AT 172077 || || || || |||||||| || || | || || | || || |||| | |||| || Sbjct 94572 ACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCA-TCTATTGGAT 94514 Query 172078 AAAAA 172082 ||||| Sbjct 94513 AAAAA 94509 >seq9360 Length=2047533 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 || |||||||| |||||||| || | |||||| ||||||||||| | |||||| | Sbjct 1277965 AATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCT 1277906 Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCT 39277 || ||||| || |||||||| || ||||| || |||| ||| Sbjct 1277905 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCT 1277865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904967248707000