Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq3221 114 2e-20
seq7271 107 3e-18
seq9360 84.2 4e-11
>seq3221
Length=646307
Score = 114 bits (126), Expect = 2e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931
||| | |||||| |||||||| || | || | || |||| ||||||||||| ||
Sbjct 261377 AGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCGTCTTCCAATTGTTTTCC 261436
Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991
|||||| || ||||| ||||| || ||||| || || || || ||||| || || ||
Sbjct 261437 AGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTGTCTTGGATCTTGGCCTT 261496
Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051
|||||| || |||||||| || || || ||||| || || || ||||||| ||
Sbjct 261497 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 261556
Query 172052 TTTAATGAATATCTGCAT 172069
||| | ||| ||||||||
Sbjct 261557 TTTGACGAAGATCTGCAT 261574
Score = 109 bits (120), Expect = 1e-18
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931
||| | |||||| || ||||| || | || | || |||| ||||||||||| ||
Sbjct 219741 AGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCCAATTGTTTTCC 219800
Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991
||||| || ||||| ||||| || ||||| || ||||| || ||||| || || ||
Sbjct 219801 GGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTT 219860
Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051
|||||| || |||||||| || || || ||||| || || || ||||||| ||
Sbjct 219861 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 219920
Query 172052 TTTAATGAATATCTGCAT 172069
||| | ||| ||||||||
Sbjct 219921 TTTGACGAAGATCTGCAT 219938
Score = 100 bits (110), Expect = 5e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901
|||||| | ||| || | || | ||| | || | ||| || ||| |||||||| |
Sbjct 290125 ACCACCACGAAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGC 290184
Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961
||||| || | || || | || || |||||||| || | ||||| || || |||||
Sbjct 290185 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 290244
Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021
|| ||||| || || || || || || |||||| ||||||||||| || ||
Sbjct 290245 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCAC 290304
Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| |||||||| || || ||||| || || || | |||||||||||
Sbjct 290305 CTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 290352
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| || || || | || | ||| | || | ||| || || ||||||||
Sbjct 290351 ATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCC 290410
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || | | | || || | ||||| ||||| || || || | ||| || || |||
Sbjct 290411 GCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGT 290470
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| |||||||| ||||| || ||||| || || ||||| ||
Sbjct 290471 GGAATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 290530
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | |||||| ||||| ||||| | || |||| |||||||||||
Sbjct 290531 ACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 290580
>seq7271
Length=339586
Score = 107 bits (118), Expect = 3e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898
|| |||||| | || || | || | ||||||||||| ||| || ||||| || ||
Sbjct 99762 AAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTC 99703
Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958
| |||| || | || |||| || || || |||||||| || ||||| || || ||
Sbjct 99702 AGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGG 99643
Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
|| || ||||| || || || |||||| || |||||| || || ||||| ||
Sbjct 99642 AGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTC 99583
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || || || |||||||| || || ||||| || | ||| |||||||||
Sbjct 99582 AACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCACGAAAATCTGCATT 99531
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | ||| || | || || || | ||| | ||| || |||||| || ||
Sbjct 99077 ATACCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCG 99018
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | | | | || || | || ||||||||||| || | ||||| ||||||||
Sbjct 99017 GCGAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGC 98958
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || ||||| || ||| ||| ||||| |||||||| || ||
Sbjct 98957 GGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 98898
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||| |||||||| || ||||| | || |||| || || |||||
Sbjct 98897 ACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 98848
Score = 95.1 bits (104), Expect = 2e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| || | || || || | || | ||| || ||| |||||||||
Sbjct 99305 ATGCCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCT 99246
Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958
| || | || | | || || | || || ||||||||||| || ||||| ||||| ||
Sbjct 99245 GC-AAGGGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGG 99187
Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
|| || || || |||||||| || || || |||||| ||| || ||||| |||
Sbjct 99186 AGGAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTC 99127
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||| ||||| || ||||| || || || | || ||||||||
Sbjct 99126 CACCTCCAAAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 99076
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || | || || || | ||| | ||||| || ||||| |||
Sbjct 95436 ATACCACCACGGAGGCGAAGAACCAAGTGGAGAGTGGATTCTTTCTGGATGTTATAGTCT 95377
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || | | | || || | || || ||||||||||| | ||||| || || |||
Sbjct 95376 GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGT 95317
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || ||||| ||||| ||| ||||| || || || || ||||
Sbjct 95316 GGGATACCCTCCTTGTCTTGAATTTTGGCTTTCACATTGTCAATGGTGTCAGAGCTTTCT 95257
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| || ||||| || || | ||||| | || ||||||||
Sbjct 95256 ACCTCAAGAGTGATTGTTTTTCCTGTCAGGGTTTTCACAAAAATCTGCAT 95207
Score = 86.0 bits (94), Expect = 1e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968
||| | || || | ||||||||| ||||| || | || || ||||| ||||| || |||
Sbjct 98552 CGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCT 98493
Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028
|| || || || ||||| ||| ||||| || || || || || ||||| |
Sbjct 98492 TCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAG 98433
Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || ||||||||||| | ||||| | ||||||||||||
Sbjct 98432 GTGATAGTTTTACCAGTCAGGGTTTTCACAAATATCTGCATT 98391
Score = 84.2 bits (92), Expect = 4e-11
Identities = 167/245 (68%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| ||||| || | || || || | || | ||| || || ||||||||
Sbjct 94752 ATGCCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCG 94693
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || | || || | |||||||||||||| || | ||||| || || |||
Sbjct 94692 GCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 94633
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || || || || ||| ||| |||||| || ||||| || |||
Sbjct 94632 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCA 94573
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT--AT 172077
|| || || || |||||||| || || | || || | || || |||| | |||| ||
Sbjct 94572 ACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCA-TCTATTGGAT 94514
Query 172078 AAAAA 172082
|||||
Sbjct 94513 AAAAA 94509
>seq9360
Length=2047533
Score = 84.2 bits (92), Expect = 4e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236
|| |||||||| |||||||| || | |||||| ||||||||||| | |||||| |
Sbjct 1277965 AATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCT 1277906
Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCT 39277
|| ||||| || |||||||| || ||||| || |||| |||
Sbjct 1277905 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCT 1277865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904967248707000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |