Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq6848 522 3e-143 seq10805 205 1e-47 seq8585 93.3 5e-14 >seq6848 Length=375620 Score = 522 bits (578), Expect = 3e-143 Identities = 710/987 (72%), Gaps = 9/987 (1%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || || | ||| |||||||||||||||| || Sbjct 331159 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 331218 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| | | | || || || || || ||| | || ||||| ||| ||||| Sbjct 331219 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCT-CTCCT 331277 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| ||||| ||||| || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 331278 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 331337 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 331338 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 331397 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || | | || || ||||| || || || |||||||| || || || || Sbjct 331398 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 331457 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 331458 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 331517 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 || || ||| | |||||||| ||| ||||| ||||| ||||| | ||||| ||| Sbjct 331518 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCT 331577 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 331578 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 331637 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 || ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 331638 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 331697 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834 ||||| ||| ||| ||||| ||| | ||||| || || |||||||| ||||| ||| Sbjct 331698 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 331757 Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGC 72894 || | || || || | | ||||| || || ||||| || || | || || Sbjct 331758 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 331817 Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954 || | ||||| ||||| |||||||| ||||| || || |||||||| || || || || Sbjct 331818 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 331877 Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| ||| Sbjct 331878 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 331937 Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAAC 73074 | | |||||||| || | ||||| || | | ||||| | || ||||| |||||| Sbjct 331938 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 331997 Query 73075 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACC 73130 | || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 331998 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 332057 Query 73131 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 73190 |||| ||| || |||| | || |||||||| |||||||||||||||||| | || Sbjct 332058 ----TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 332113 Query 73191 TGCACACAACTTCCCACTAGACCTAGC 73217 ||| || |||||||| ||||||||||| Sbjct 332114 TGCTCATAACTTCCCTCTAGACCTAGC 332140 Score = 522 bits (578), Expect = 3e-143 Identities = 710/987 (72%), Gaps = 9/987 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || || | ||| |||||||||||||||| || Sbjct 360610 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 360551 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| | | | || || || || || ||| | || ||||| ||||||||| Sbjct 360550 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 360491 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| ||||| ||||| || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 360490 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 360431 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 360430 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 360371 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || | | || || ||||| || || || |||||||| || || || || Sbjct 360370 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 360311 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 360310 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 360251 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 || || ||| | |||||||| ||| | ||| ||||| ||||| | ||||| ||| Sbjct 360250 CTGGGTATGCGTCCTTGGATTGCTGTTG-ATATTCAGCTCCTGTTGCAGCAGCGACTGCT 360192 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 360191 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 360132 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 || ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 360131 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 360072 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834 ||||| ||| ||| ||||| ||| | ||||| || || |||||||| ||||| ||| Sbjct 360071 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 360012 Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGC 72894 || | || || || | | ||||| || || ||||| || || | || || Sbjct 360011 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 359952 Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954 || | ||||| ||||| |||||||| ||||| || || |||||||| || || || || Sbjct 359951 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 359892 Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| ||| Sbjct 359891 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 359832 Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAAC 73074 | | |||||||| || | ||||| || | | ||||| | || ||||| |||||| Sbjct 359831 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 359772 Query 73075 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACC 73130 | || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 359771 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 359712 Query 73131 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 73190 |||| ||| || |||| | || |||||||| |||||||||||||||||| | || Sbjct 359711 ----TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 359656 Query 73191 TGCACACAACTTCCCACTAGACCTAGC 73217 ||| || |||||||| ||||||||||| Sbjct 359655 TGCTCATAACTTCCCTCTAGACCTAGC 359629 >seq10805 Length=1012358 Score = 205 bits (226), Expect = 1e-47 Identities = 494/750 (66%), Gaps = 21/750 (3%) Strand=Plus/Minus Query 73652 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTT 73711 |||| ||||| || | || || | || ||||| |||||||||||| | | || ||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 73712 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATC 73771 || |||| | ||| | || ||||| || ||| |||| || || || || Sbjct 50146 GAACTTGCTCGCTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATT 50087 Query 73772 GCAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCA 73831 || || || | || || || ||||| |||| ||| | |||||||||| || Sbjct 50086 GCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 50027 Query 73832 CCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAAT 73891 ||| || ||||| || || || ||||| | || | || | || || || || ||| Sbjct 50026 CCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAAT 49967 Query 73892 ATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTA 73951 || | || || |||||||||||||| || || ||| || | || | || | ||| Sbjct 49966 TGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTA 49907 Query 73952 TGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACT 74011 |||||||| ||||| || || ||| | || || || | |||||| | Sbjct 49906 TGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGA---------------T 49862 Query 74012 GAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACT 74071 | | | | | ||| | || ||| | || || | || || || | ||||| || Sbjct 49861 G--GTGATGGTGCAAAC----ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACC 49808 Query 74072 TATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAAC 74131 ||| ||| | || |||||| | || ||||| || || ||||| | || ||||| || Sbjct 49807 TATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAAT 49748 Query 74132 AAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCT 74191 ||| | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 49747 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 49688 Query 74192 ATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATA 74251 | || | || || ||||| || ||||| | || || ||||| || || || || || Sbjct 49687 CTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATC 49628 Query 74252 AGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAA 74311 | ||||| ||||| || || ||||| || |||||||| || || |||||| | || || Sbjct 49627 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAG 49568 Query 74312 GGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAA 74371 ||||| | || |||||| | || ||||| || ||||| ||| || | ||||| || Sbjct 49567 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 49508 Query 74372 GAAGTCTTGCCACGAGGCAACGCACTATAA 74401 || || | || || || ||||| || ||| Sbjct 49507 GAGGTTCTACCCCGTGGAAACGCTCTTTAA 49478 >seq8585 Length=236491 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 73535 AATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 73594 || || ||||| || ||||| || || |||| | || | | | ||| | | ||||| Sbjct 27782 AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTA 27723 Query 73595 CTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 73654 || ||||| || || |||||||||||| || || |||| ||||||||| || || ||| Sbjct 27722 CTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGG 27663 Query 73655 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCAT 73698 | ||||| || | || || | || ||||| ||||||||||| Sbjct 27662 ACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCAT 27619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572766794878200