Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9360 203 4e-46 seq5601 194 2e-43 seq12026 96.9 4e-14 seq6191 91.5 2e-12 seq5512 91.5 2e-12 seq14694 89.7 6e-12 >seq9360 Length=2047533 Score = 203 bits (224), Expect = 4e-46 Identities = 225/295 (76%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| || || ||| Sbjct 1277716 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGG 1277657 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| ||||||||| ||||| ||||||||| |||||||||||| ||| ||||| Sbjct 1277656 ACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAG 1277597 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| ||| ||||| |||||| || | || | | |||||||| || Sbjct 1277596 AAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG-CG 1277538 Query 869813 GTG-TC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | || ||| || || || ||||| |||||||| | ||| || ||||| || |||| Sbjct 1277537 GAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGT 1277479 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| ||||| | ||| |||| | || ||||| | | ||| || | ||| || Sbjct 1277478 ACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATT 1277424 Score = 113 bits (124), Expect = 6e-19 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 1277956 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 1277897 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | | ||| || || || || ||| | Sbjct 1277896 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCC------G 1277843 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| || | |||||| ||| || || || | || ||||| ||||||||| Sbjct 1277842 TCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 1277783 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||||||| ||| ||||||| | | ||| |||| || || || | || ||||| || Sbjct 1277782 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTA 1277724 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || || || || ||||| || | ||||||||||| ||||||||| || || || | | Sbjct 1278283 TCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCTCCATCCAATCAAAAGGATTCGCC 1278224 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 ||| |||| || | || |||| | | || | || ||||||||||| ||| Sbjct 1278223 ACTCCGTACAGCTTCCCGTACCCAAGCGCACCCAACAATCTATCCGCGACAAACTCTATG 1278164 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897 ||||| | ||| | | | ||||| || | | ||| |||||||| |||| |||| Sbjct 1278163 TACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCACGGCAGCGCATCGCACACA 1278104 Query 868898 AACTCTTTCTCGATCTCGACGGCCTC 868923 |||||| |||| ||||| || ||||| Sbjct 1278103 AACTCTCTCTCTATCTCCACCGCCTC 1278078 >seq5601 Length=566945 Score = 194 bits (214), Expect = 2e-43 Identities = 221/294 (75%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| | |||||| Sbjct 476698 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGG 476757 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| | |||| ||||| ||| ||||| ||||| ||||||||| Sbjct 476758 ACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCCGAGGCGGCGAAG 476817 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| |||| ||||| ||||||| | | || || |||| ||| | Sbjct 476818 AAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATTCCCACTGGCGG 476877 Query 869813 GTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| ||||| |||||||| || ||||| | || || ||||| || ||||| Sbjct 476878 ATGTCCTGCG-ACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 476936 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| ||||| | || | |||| |||| || || | | || |||| ||||| Sbjct 476937 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTT 476990 Score = 120 bits (132), Expect = 4e-21 Identities = 175/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||||| ||||| | |||||||| || | |||||| || ||||||||||| ||| Sbjct 476449 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTACCC 476508 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| || || || || ||| ||||| | || || | ||| || || || || | Sbjct 476509 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 476568 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTG 869389 || || |||||| || | ||||| ||||||||||| || |||||||||| Sbjct 476569 CC------GTCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTT 476622 Query 869390 TCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGG 869449 || | ||||||||| | | || ||||||| | | || || | || || || | ||| Sbjct 476623 TCAAAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGG 476682 Query 869450 AGCGAATA 869457 ||||| || Sbjct 476683 AGCGAGTA 476690 >seq12026 Length=924662 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||||| || ||| ||| || |||| || || Sbjct 683296 GCAGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGAC 683237 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| || |||||||||||||||||| Sbjct 683236 ATGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG 683186 >seq6191 Length=471716 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || ||||| ||||| |||||||| | |||| || |||| ||| | |||| || | Sbjct 359307 GCAGCCAATTACCTGAACATCAAGAGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAGA 359365 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| ||| | || |||||||||||||||||||| ||||||||| Sbjct 359366 CATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 359417 >seq5512 Length=582012 Score = 91.5 bits (100), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAA 869275 || || ||||| | || ||||| || | |||||| || ||||||||||||||||||||| Sbjct 61245 AGCCCCGGCATTAACCCACGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCGAGAAA 61304 Query 869276 AAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCC 869335 || || || || || ||||| | || || | ||| | || || || ||| Sbjct 61305 AATATCCCTTCCACACAAGCAAACGCTATCAGTCTCTCCGTGAATGTCTCCGAGCC---- 61360 Query 869336 TTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395 || |||| | || ||||| || ||||||| | || |||||||||| || ||| Sbjct 61361 --GTCGATCTAATTTCGGGCCCAATCTGCCTTTTGGC-AACTCACGGCACCGTTTCAATG 61417 Query 869396 GCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||||| | | || ||||||| Sbjct 61418 GCGCGAAATAAGCGGCTCTTTTCG 61441 >seq14694 Length=775769 Score = 89.7 bits (98), Expect = 6e-12 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || |||||||| | | | || ||||||||||| ||||||||| |||| || ||| Sbjct 255311 ACGCTCTTTGACCTATTAATGGCGGCCAACTACCTGGACATCAAGAGCTTGCTGGA-CTT 255253 Query 1592225 GGG-TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 | ||| | |||| || ||||||||||||||||||| || || ||||||||| |||| Sbjct 255252 GCTCTGCCAAACTGTTGCTGACATGATCAAGGGCAAGTCTCCTGAAGAGATCCGCCAGAC 255193 Query 1592284 CTTTAACATCAAG 1592296 ||| ||||| || Sbjct 255192 CTTCCACATCCAG 255180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105915205253055