Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq12505 93.3 3e-14 seq3221 89.7 4e-13 seq13804 84.2 2e-11 seq7271 84.2 2e-11 >seq12505 Length=74167 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | || |||||| || ||||| |||| ||| |||||||| |||| Sbjct 7865 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 7924 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| |||||| | || ||||| ||||||||||| || || ||| | ||| |||| Sbjct 7925 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGT 7980 >seq3221 Length=646307 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| |||||||| ||||| | |||||||| || || ||| ||||| |||| Sbjct 212074 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 212015 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| || || | || ||| Sbjct 212014 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 211955 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || || || || || | | | || |||| |||||| Sbjct 211954 CAGCAGCGTCTCATCTTTGCAGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 211895 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || ||||| | || | || || || || |||| Sbjct 211894 AACATTCAAAAAGAATCCACTTTGCATCTTGTCCTCAGGCTTCGTGGTGGAA 211843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330 ||||| || || || ||||| || ||||||||||| ||||| ||||| || |||| | Sbjct 291492 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAAACTATTACTCTCGAAGTCGAGAGCTCG 291433 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || ||| ||| | | ||||| ||||| ||||| || || | || ||| | Sbjct 291432 --GACACTATCGACAACGTAAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCGGACC 291375 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || ||||| | ||| || || ||||| ||||| | | | || |||| ||||||| Sbjct 291374 AGCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACA 291315 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||| || || || || || Sbjct 291314 ACATCCAGAAGGAGTCAAC 291296 >seq13804 Length=830140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||| | ||||| || || || ||| | || |||| | Sbjct 395814 ATGCAGATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCC 395873 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| ||||| | ||| ||| || Sbjct 395874 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 395933 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||||||||| | | | || |||| ||||| ||| Sbjct 395934 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAAC 395993 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || ||||| ||| | ||| | ||||| | ||| | || |||| Sbjct 395994 ATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAA 396042 >seq7271 Length=339586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | ||||| |||||||| ||| | || || | Sbjct 94523 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAAACCATAACCCTTGAGGTTGAAAGCTCC 94582 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| ||||| ||||| ||||| | || ||||| Sbjct 94583 GATACCATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAG 94642 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||||||||| ||||||| | ||| | || ||||| ||| Sbjct 94643 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAAC 94702 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || || || || ||||| |||| Sbjct 94703 ATCCAGAAGGAGTCGACCCTGCACTTGGT 94731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412766555073095