Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9360 168 1e-35 seq5601 158 2e-32 seq5512 127 3e-23 seq8028 118 2e-20 >seq9360 Length=2047533 Score = 168 bits (186), Expect = 1e-35 Identities = 208/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 1277956 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 1277897 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | | ||| || ||||| ||| ||| || Sbjct 1277896 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC---- 1277841 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| || | ||||||| || || || || |||| ||||| ||||||||| Sbjct 1277840 --GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 1277783 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| ||| ||| ||| | | ||| |||| ||| || || | || |||||||| Sbjct 1277782 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTAC 1277723 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 1277722 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 1277678 Score = 154 bits (170), Expect = 2e-31 Identities = 198/268 (74%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||| ||||||| | ||||| |||||||| ||||||||| Sbjct 1277671 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 1277612 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| |||||||| |||||| ||| ||||| |||||| || | || Sbjct 1277611 TCGGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 1277552 Query 796270 GAGACCCAGTGGACCGTG-TC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||||| | | | || ||| || || || ||||| ||||||||||| || | Sbjct 1277551 GCCTCCCAGTGG-CGGAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACG 1277494 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 | ||||| || |||||||| ||||| || || |||| | || ||||||| ||| | Sbjct 1277493 CTTCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 1277434 Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||| ||| || | |||||||||||| Sbjct 1277433 GATCGGGATTTGGGGCTAGCAGCGGCTC 1277406 Score = 91.5 bits (100), Expect = 2e-12 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || || || || ||||| || | ||||||||||| ||||||||| || || || ||| Sbjct 1278283 TCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCTCCATCCAATCAAAAGGATTCGCC 1278224 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 ||| ||||| || |||| |||| || ||| || | || ||||| || || || Sbjct 1278223 ACTCCGTACAGCTTCCCGTACCCAAGCGCACCCAA-CAATCTATCCGCGACAAACTCTAT 1278165 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103 |||||| | ||| | | | ||||| || | | ||| ||| ||||||| |||| | Sbjct 1278164 GTACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCAC-GGCAGCGCATCGCACA 1278106 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTC 794131 |||||||| |||| ||||| || ||||| Sbjct 1278105 CAAACTCTCTCTCTATCTCCACCGCCTC 1278078 >seq5601 Length=566945 Score = 158 bits (174), Expect = 2e-32 Identities = 199/269 (74%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || |||||||| | | |||| ||||| || ||||| ||| Sbjct 476743 GCCTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCG 476802 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||| |||||| |||| ||||| ||||||| | | || Sbjct 476803 TCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGG 476862 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| |||| ||| | |||||||||||||| || |||||||| || || Sbjct 476863 GATTCCCACTGGCGGATGTCCTGCGAC-AGGTCGACCTCCTCCGCCGTCCAAAATGAAGC 476921 Query 796329 CTCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 ||||| || |||||||| |||| || |||| |||| |||| || |||| || Sbjct 476922 TTCGGCTTTCTTGTACATTTCCCAGATTTCCG--GGTACTGGATTGGAAACATGCAGAAT 476979 Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || | |||||| | |||||||||||| Sbjct 476980 CGGTCTGGGTTCGGGGTTAGCAGCGGCTC 477008 Score = 156 bits (172), Expect = 7e-32 Identities = 207/288 (72%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 ||||| ||||| | |||||||| || | |||||| || || |||||||| |||||||| Sbjct 476455 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTACCCGAGAAG 476514 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || || ||| ||||| | | || | ||| || || || ||| ||| || Sbjct 476515 AATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGCCGTC- 476573 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 |||||| || | ||||| || |||||||| || | |||||||| || | | Sbjct 476574 -----GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAG 476628 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 |||||||| | | || ||| ||| | | || || | ||| || || | ||||||||| Sbjct 476629 GCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAG 476688 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 476689 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 476736 Score = 86.0 bits (94), Expect = 1e-10 Identities = 150/212 (71%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 ||| || || || ||||| || | ||||| |||||||||||||| ||||| || Sbjct 476130 CTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAACTCCATCCAATCAAACGGATT--- 476186 Query 793985 CGTCA---GGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATT 794040 ||||| ||| |||| |||||||||||| || ||| || | || || || || | Sbjct 476187 CGTCACGCCGTACACCTTCCCGCACCCGAGCGCACCCAA-CAACCTATCTGCCACAAACT 476245 Query 794041 CAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCG 794099 | |||||||| | ||| | || ||||||| || | | || ||| ||||||| ||| Sbjct 476246 CTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAATGCGCAC-GGCAGCGCGTCG 476304 Query 794100 CTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | || ||||| |||| ||||| || ||||| Sbjct 476305 CACACGAACTCCCTCTCTATCTCCACCGCCTC 476336 >seq5512 Length=582012 Score = 127 bits (140), Expect = 3e-23 Identities = 190/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||| || ||||| || |||||||| | | | || ||||| || ||||| ||| Sbjct 61533 GCCTCGAAGACATGGACTTCTTTCATGAATCTGGCTGCGAGGTTTTCGAGGACGATTCCG 61592 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| |||||||||||||| ||||| |||| ||||| ||||||| || | || Sbjct 61593 TCCGAGGCAGCGAAAAAGGCGAGCACGTGTGTGATGAAGTGTTTCTCGTCGGCGGTTAGG 61652 Query 796270 GAGACCCAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| ||| | || | ||||| | |||||| || |||||||| || || Sbjct 61653 GATTCCCACTGGCGGATGTCCTGCAAC-AGGTCAAGCTCCTCTGCCGTCCAAAATGAAGC 61711 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| || |||||||| ||||| || | |||| |||| || |||| | || Sbjct 61712 TTCGGCTTTCTTGTACATTTCCCAGATTTCTGGGTACTGGATTGGAAACATGCAGGATCG 61771 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||| | ||||||||| || Sbjct 61772 GTTTGGGTTCGGGGTTAGCAGCGGTTC 61798 Score = 123 bits (136), Expect = 4e-22 Identities = 202/289 (70%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || ||||| | || ||||| || | |||||| || || |||||||||||||||||| Sbjct 61245 AGCCCCGGCATTAACCCACGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCGAGAAA 61304 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || || || ||||| | | || | ||| | || || ||| ||| Sbjct 61305 AATATCCCTTCCACACAAGCAAACGCTATCAGTCTCTCCGTGAATGTCTCCGAGCC---- 61360 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 || |||| | || ||||| |||||||||| | || | |||||||| || ||| Sbjct 61361 --GTCGATCTAATTTCGGGCCCAATCTGCCTTTTGGC-AACTCACGGCACCGTTTCAATG 61417 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCG-GGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615 |||||||| | | || ||| ||| | | | | || | ||| || || | |||||||| Sbjct 61418 GCGCGAAATAAGCGGCTCTTTTCGTCAGAGTTTTTTTATGTAAGTTTCTAGAAGGAGCGA 61477 Query 794616 GTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||| | || ||||||| ||| | ||||||||| ||||||| || ||| Sbjct 61478 GTACATTTCGGAGTGGACGTTCTTGATGGCGATTTGGAAGCTGTAGAAG 61526 >seq8028 Length=1293725 Score = 118 bits (130), Expect = 2e-20 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| ||| Sbjct 504572 TGAACTTGGTAACGGCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCA 504631 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||||||||||||| | | |||||| |||||| | Sbjct 504632 AGACCAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGTTGTACC 504691 Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| || || ||||| | ||| || |||| || ||||||| || |||| Sbjct 504692 TCGCGAGACGAGACGCCTCTTGGGCCAAT-TTCTCGAAGATATCGTTGATGAAACTGTTC 504750 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||||||| || | ||||| || |||||||| || |||||| Sbjct 504751 ATGATGCCCATGGCCTTGCTGGAGATACCGATATCGGGATGAACCTGCTTCAGGACCTTG 504810 Query 1485709 TAAA 1485712 ||| Sbjct 504811 AAAA 504814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914659823422685