Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq12505 95.1 1e-14
seq3221 86.0 5e-12
seq7271 84.2 2e-11
>seq12505
Length=74167
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708
|| || |||||| | || ||||||||||||||| |||| ||| |||||||| ||||
Sbjct 7865 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 7924
Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| | || ||| | || || || ||||||||||||||||| ||| | ||| |||| ||
Sbjct 7925 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCTG 7984
Query 107769 AG 107770
||
Sbjct 7985 AG 7986
>seq3221
Length=646307
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||| ||||| ||| | || || ||||| |||||| | || |||| |
Sbjct 211615 ATGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCT 211556
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || |||||| ||||| ||||| | || ||||||
Sbjct 211555 GATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAG 211496
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| || || ||||| ||||| | | || | || || || |||
Sbjct 211495 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATTATAAC 211436
Query 107736 ATTCAAAAGGAGTCTAC 107752
|||||||||||||| ||
Sbjct 211435 ATTCAAAAGGAGTCCAC 211419
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||||||||||||||| ||||| || || || || ||||| | || |||| |
Sbjct 219710 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACTATTACTCTGGAGGTGGAGAGTTCT 219651
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | || || ||||||| ||||| ||||| | || ||||||
Sbjct 219650 GATACAATTGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGGATTCCACCAGATCAG 219591
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | || || || ||||| ||||||| | || | || || || |||
Sbjct 219590 CAGAGGCTCATCTTCGCTGGGAAGCAGCTAGAGGACGGCCGTACCCTTGCTGATTATAAC 219531
Query 107736 ATTCAAAAGGAGTCTAC 107752
|| ||||||||||| ||
Sbjct 219530 ATCCAAAAGGAGTCCAC 219514
>seq7271
Length=339586
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| ||||| || ||| | || || |||||||| ||| | || || |||
Sbjct 94523 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAAACCATAACCCTTGAGGTTGAAAGCTC- 94581
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|||||| | | | || ||| ||||| || || ||||| | || |||||
Sbjct 94582 CGATACCATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 94641
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||| | ||| ||||||||||| ||||| | ||| | || || || ||
Sbjct 94642 GCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAA 94701
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| || |||||||| || ||||| ||||
Sbjct 94702 CATCCAGAAGGAGTCGACCCTGCACTTGGT 94731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398804293546435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |