Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq10805 98.7 4e-16 >seq10805 Length=1012358 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 35984 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 35925 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 35924 CTGCTCTACCCCGC 35911 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 46393 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 46334 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 46333 CTGCTCTACCCCGC 46320 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 37630 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 37571 Query 50170 CTGCTCTACTCCGC 50183 ||||||| | |||| Sbjct 37570 CTGCTCTCCCCCGC 37557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181571035235730