Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7271 105 4e-18 seq13804 96.9 2e-15 seq3221 96.9 2e-15 seq5889 89.7 3e-13 >seq7271 Length=339586 Score = 105 bits (116), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| || || || || || ||| Sbjct 55917 AAAATCTGCATGCCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATG 55858 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | ||||||||| | || || | |||||| |||||||| || | | ||| Sbjct 55857 TTGTAGTCTGCAAGTGTGCGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGC 55798 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||||| || || |||||| ||| | ||| |||| |||||| Sbjct 55797 TGGTCTGGTGGGATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTC 55739 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||| || | ||||| || || || || | || ||||||||||||||||| Sbjct 55738 GGAGCTTTCCACCTCCAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 55679 Query 33750 A 33750 | Sbjct 55678 A 55678 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || ||| ||| || || ||||| || |||| Sbjct 98390 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 98331 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||| || |||||||| | | ||||| ||| | || Sbjct 98330 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 98271 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || ||| | ||| |||| ||||||| |||||| Sbjct 98270 ATCCCTTCCTTGTCCTGAATCTTGGCTTTGA-CATTGTCAATGGTGTCGGAGCTTTCCAC 98212 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || |||||||||||||||||| Sbjct 98211 CTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 98163 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || ||||| ||||| | Sbjct 55678 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGC 55619 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| |||||||| || | | |||||| ||| | || Sbjct 55618 AAGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 55559 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||||| ||| |||| ||||||| ||||| Sbjct 55558 GATCCCTTCCTTGTCCTGAATCTTGGCTTTCA-CATTGTCAATGGTGTCGGAGCTTTCCA 55500 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || || || || | || |||||||||||||||||| Sbjct 55499 CCTCAAGAGTAATTGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 55450 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 56343 ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 56284 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 56283 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 56224 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| | | ||| | |||||| ||| || |||| || || ||||| Sbjct 56223 ATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 56165 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||| |||||||||||||| Sbjct 56164 TCCGGTGAGCGTTTTCACAAAGATCTGCAT 56135 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | |||||||| || || || || || |||||||| || | Sbjct 94978 ACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 94919 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || || | |||||| || ||||| || | | ||||| ||| | || Sbjct 94918 AAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGG 94859 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||||| || || |||||| ||| | ||| |||| |||||| |||| | Sbjct 94858 GATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTCCGAGCTT---T 94803 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| || || || || || || | || ||||||||||| ||||| Sbjct 94802 CCACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 94751 >seq13804 Length=830140 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 ||||||||| | | ||| | || | || |||||| ||| ||||| ||||||||||| Sbjct 396272 GTCACCACCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATC 396213 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || ||| || || | || || | || || ||||| || ||||| |||||||| || | Sbjct 396212 GGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGG 396153 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | || |||||||| || || ||| || | ||| | |||||| | Sbjct 396152 TGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATCGTGTCGGAGCTCT 396094 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || || || ||||| || || ||||||||||| Sbjct 396093 CCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 396042 >seq3221 Length=646307 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| ||||||| ||| ||||| ||| || || ||||||||||| | Sbjct 211616 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC 211675 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || |||| || || || ||||| |||| ||||||||||| | || Sbjct 211676 AAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGG 211735 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||||| || | || | ||| | |||||| ||| | Sbjct 211736 GATCCCTTCCTTGTCCTGGATTTT-TGCCTTGACGTTGTCAATGGTGTCAGAGCT---CT 211791 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | |||||||| || || || | ||||| || ||||||||||| Sbjct 211792 CGACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 211843 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||||||||||| | ||||| | || || | ||| |||||||| || Sbjct 220202 CTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAA 220261 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||||||| | || | || || ||||| || || ||| || | Sbjct 220262 GATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGT 220320 Query 33678 AGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTT 33733 ||| | |||||| ||| ||||| || | ||||||||||| || |||| |||| Sbjct 220321 TGTCGATGGTGTCAGAGCT---CTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTT 220377 Query 33734 TTACAAAGATCTGCATA 33750 | ||||||||||||||| Sbjct 220378 TCACAAAGATCTGCATA 220394 >seq5889 Length=513596 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| ||||||| ||| ||||| || || || ||| Sbjct 197812 AAAATCTGCATGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATG 197753 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | ||| || | | | || |||| || || || || || |||||||||||| Sbjct 197752 TTGTAATCCGCGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGC 197693 Query 33631 TGATCTTGCGGCACACCTTCTTTGTC 33656 || || |||| | ||||| ||||| Sbjct 197692 TGGTCCGGCGGAATCCCTTCCTTGTC 197667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328644249316800