Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5601 113 4e-20 seq7271 89.7 5e-13 seq3221 87.8 2e-12 >seq5601 Length=566945 Score = 113 bits (124), Expect = 4e-20 Identities = 342/518 (66%), Gaps = 18/518 (3%) Strand=Plus/Minus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 ||||| |||||| |||||||||| | |||||| | || |||||||| || | | Sbjct 476618 GTGCCGTGCGTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCG---GAG 476562 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || ||| | || | || || || || ||||| | || || ||||| ||| Sbjct 476561 ACATTCGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGTAGT 476502 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 || ||| || |||| | |||| || ||||||||||||| || ||| ||| Sbjct 476501 TTCTGCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAAC 476442 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 ||| | |||||||| || |||||||| ||| || || ||||| | | |||| | Sbjct 476441 GAGCTAATCTCGCGAGATGAAGGACTCCACTGCGATTTCGCGTGCTTGTTGTACAGCTTG 476382 Query 46998 CGCGTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGGAGGCGGTGAG 47056 | ||| | ||||||| | ||| | || | | | || | | |||||||||| Sbjct 476381 C---TGAGGAACAAATTAAGCGAGGAGCGCG-TGAAGGGGATAGTGAAGGAGGCGGTGGA 476326 Query 47057 CATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACGCA 47114 || || | |||||| | |||| |||||||| ||| ||| |||| ||||||| Sbjct 476325 GATAGAGAGGGAGTTCGT--GTGCGACGCGCTGCCGTGCGCATTGGTGGGGATGAACGGG 476268 Query 47115 CAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTT-GGTGCAGCTCGGACA 47173 || ||| | | || || ||||||||||| ||| | |||| ||||| |||||| Sbjct 476267 GCGTTGATGAGTCAGTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGC-GCTCGG--G 476211 Query 47174 ACCGAAATATTTTAATGCTCG--TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAG 47231 || | | || || | ||||||||||| | ||| | |||||||| | Sbjct 476210 TGCGGGAAGGTGTACGGCGTGACGAATCCGTTTGATTGGATGGAGTTGATTTCGCTGCAA 476151 Query 47232 GGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || || || ||||| || ||||| ||||||| || || Sbjct 476150 GGGAAGACGAATTTCTTTGAGAAGAGAGTCGGGGAATA 476113 >seq7271 Length=339586 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | |||| || || || ||||||||||| | || || ||| || Sbjct 98600 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 98541 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| | |||| || | || || ||||| || || ||||| || || | Sbjct 98540 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 98481 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | || |||| ||| ||||| | || | |||||| Sbjct 98480 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTTTA 98421 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||| | || |||||||| Sbjct 98420 CCAGTCAGGGTTTTCACAAATATCTGCAT 98392 >seq3221 Length=646307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||| ||| || ||| || ||||||||| || || |||| Sbjct 220198 TTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGG 220257 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| |||||||| ||||| ||||| || || || || || || || |||| Sbjct 220258 CGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCA 220317 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||||||||||| || | |||||| || || || |||| Sbjct 220318 CGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTT 220377 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 220378 TCACAAAGATCTGCAT 220393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476522341799400