Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5601 297 3e-74 seq9360 284 2e-70 seq5512 223 5e-52 seq8028 95.1 2e-13 >seq5601 Length=566945 Score = 297 bits (328), Expect = 3e-74 Identities = 408/563 (72%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||| | ||||| |||| || | |||| || |||| |||| | Sbjct 477008 GAGCCGCTGCTAACCCCGAACCCAGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 476949 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| || || |||||||| || |||||||||||||| Sbjct 476948 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCGGAGGAGGTCGACCT 476890 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| | ||| ||| |||| || || | | ||||||| || ||||||| || Sbjct 476889 -GTCGCAGGACATCCGCCAGTGGGAATCCCTAACGGCCGACGAGAAACACTTCATCACGC 476831 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||||| || ||||||| || || ||||| ||| ||||| |||| | | Sbjct 476830 ACGTGCTCGCCTTCTT-CGCCGCCTCGGACGGAATCGTCCTCGAAAACCTCGCCGCCAGG 476772 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||||||| |||||| | | ||||| ||| || ||||| ||||| ||||||||| Sbjct 476771 TTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 476712 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| |||| ||||||||||| | || || ||| | || || | | | Sbjct 476711 GAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAACTCCGAC 476652 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| || | | ||||||||| | || |||||||||| || ||||||||||| Sbjct 476651 GAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAAAAAGGCCGAT 476592 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGC 1456193 ||||| | || |||||| || ||| || || || || ||| | || | | Sbjct 476591 TGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTGATAGCG 476538 Query 1456194 TTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| |||| || || || || |||||||| ||||||||||| || |||||| | || Sbjct 476537 TTTGCTTGCGTGGAAGGGATATTCTTCTCGGGTAGTTTCTGCGCGATATTTTGGTTGAAA 476478 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 476477 AAGCGCGGGTTAATGCCGGGCCT 476455 >seq9360 Length=2047533 Score = 284 bits (314), Expect = 2e-70 Identities = 408/562 (73%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||| || | | | ||||| | |||| | ||||||| || | |||| | Sbjct 1277406 GAGCCGCTGCTAGCCCCAAATCCCGATCGATTTTG-CATGTTCCCGATTCAGTACCCACA 1277464 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||||||||||| | |||| |||| || || ||||||||||| ||||| || || | Sbjct 1277465 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATC 1277523 Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||| || | | | |||||||| | | || | || |||||| || ||| ||| Sbjct 1277524 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAC 1277581 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| |||||||| || ||| ||| ||| |||||||| ||||||||| ||||| Sbjct 1277582 GCACGTGCTCGCCTTCTT-CGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAA 1277640 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||| |||||||| | | ||||| ||| || ||||| ||||| ||||||| Sbjct 1277641 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCA 1277700 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| |||| |||||||| || | || || ||| |||| ||| | | Sbjct 1277701 TCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCG 1277760 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| ||| ||||||| ||||||||| ||||| || | || || || ||| Sbjct 1277761 ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCA 1277820 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 |||||| | || |||||| || ||| || ||||| || ||| | | ||| Sbjct 1277821 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTCGCGGAGAGATTAATCG 1277874 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| || || ||||| || ||||| ||||| || |||||||||| Sbjct 1277875 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCA 1277934 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | |||||||| | ||||| || Sbjct 1277935 AAAAGCGCGGGTTAATGCCGGG 1277956 >seq5512 Length=582012 Score = 223 bits (246), Expect = 5e-52 Identities = 394/564 (70%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 || |||||||| | ||||| ||||| | | |||| || |||| |||| Sbjct 61798 GAACCGCTGCTAACCCCGAACCCAAACCGATCCTGCATGTTTCCAATCCAGTACCCAGAA 61739 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| || || |||||||| || |||||| | ||||| Sbjct 61738 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCAGAGGAGCTTGACCT 61680 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | || | ||| ||| |||| || || | || ||||||| || ||||||| | Sbjct 61679 -GTTGCAGGACATCCGCCAGTGGGAATCCCTAACCGCCGACGAGAAACACTTCATCACAC 61621 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| ||||||||||| ||| ||| || || ||||| ||| ||||| || | | | Sbjct 61620 ACGTGCTCGCCTTTTT-CGCTGCCTCGGACGGAATCGTCCTCGAAAACCTCGCAGCCAGA 61562 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||||||| ||||| | ||||| ||| || ||| | ||||| ||||||||| Sbjct 61561 TTCATGAAAGAAGTCCATGTCTTCGAGGCGCGTGCCTTCTACAGCTTCCAAATCGCCATC 61502 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGT-CAAGGACCCGGT 1456073 | ||| ||||||| |||| ||||||||||| | || || ||| | || || | | Sbjct 61501 AAGAACGTCCACTCCGAAATGTACTCGCTCCTTCTAGAAACTTACATAAAAAAACTCTGA 61442 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||| ||| || | | ||||||||||| || |||||||||| || | ||||||| || Sbjct 61441 CGAAAAGAGCCGCTTATTTCGCGCCATTGAAACGGTGCCGTGAGT-TGCCAAAAGGCAGA 61383 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGG 1456192 ||||| || | |||| || ||| || || || | ||| | || | | Sbjct 61382 TTGGGCCCGAAATTAGATC------GACGGCTCGGAGACATTCACGGAGAGACTGATAGC 61329 Query 1456193 CTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||| | || || || || ||||||||||||||||||||||| || |||||| | || Sbjct 61328 GTTTGCTTGTGTGGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTAAA 61269 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| || | ||||| || || Sbjct 61268 AAAGCGTGGGTTAATGCCGGGGCT 61245 >seq8028 Length=1293725 Score = 95.1 bits (104), Expect = 2e-13 Identities = 160/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||| || |||||||| || ||| | || | ||| |||| |||| ||||| Sbjct 504810 CAAGGTCCTGAAGCAGGTTCATCCCGATATCGGT-----ATC-TCCAGCAAGGCCATGGG 504757 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACC-GAGGCCGGTCGCC 725034 ||||||||| || ||||||| || |||| || ||| | ||||| ||| | Sbjct 504756 CATCATGAACAGTTTCATCAACGATATCTTCGAGAA-ATTGGCCCAAGAGGCGTCTCGTC 504698 Query 725035 TGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCC 725094 | ||| | | ||||||| |||||| || | |||||||||||||||||| | Sbjct 504697 TCGCGAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGAT 504638 Query 725095 TGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| ||| ||| |||||| ||||||||| || ||||| |||| Sbjct 504637 TGGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCA 504590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176372620836230