Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq6848 563 1e-155 seq10805 419 3e-112 seq6804 111 2e-19 seq6913 105 1e-17 seq8585 102 1e-16 >seq6848 Length=375620 Score = 563 bits (624), Expect = 1e-155 Identities = 698/951 (73%), Gaps = 3/951 (0%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | |||||||| |||||| | ||||| ||||| || || |||||||| Sbjct 331186 AACCGTCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 331245 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||| ||| | | | |||| ||||| || || ||||| || ||||| Sbjct 331246 -TCTGTATTTATTATCGCCTTCATTGCT-CTCCTCCAGTAGATATTGACGGTATTCGTGA 331303 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || || | ||||||||||| || || |||||||| || |||||| Sbjct 331304 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTAC 331363 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || ||| | || || ||||| || |||||||| || | | || ||||| Sbjct 331364 TTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATG 331423 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| || ||||||| | ||| |||| | |||||| | ||||| | Sbjct 331424 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 331483 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 || ||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 331484 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 331543 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || ||||||||||| | || || ||| | |||| || ||||||| Sbjct 331544 TGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCA 331603 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| || || || | ||||| | || |||||||| || ||||||| |||| | || Sbjct 331604 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 331663 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||| || || || |||||| | |||||||| ||||||||||| || || || ||||| Sbjct 331664 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGT 331723 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCG 175093 ||||| || || | ||| || ||||||||||| | || |||||| | || | Sbjct 331724 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 331783 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || || |||| ||| || || ||||||| ||||| ||||| ||||| || Sbjct 331784 GGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAAC 331843 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 ||||| ||||| || || || || || || || || |||||||||||||| ||| || Sbjct 331844 TTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 331903 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||| || || || | || |||||| | || || ||||| || || ||||||||||| Sbjct 331904 CAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTT 331963 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 ||| || | ||| || ||| ||||| |||||| | ||||||||||| |||||||| || Sbjct 331964 CACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATC 332023 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 ||| | || | |||||| | ||| | || |||||||| ||| || |||| | ||| Sbjct 332024 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAA 332083 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||||| |||||||| |||||||| | ||||| || |||||||| ||||| Sbjct 332084 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 332134 Score = 563 bits (624), Expect = 1e-155 Identities = 698/951 (73%), Gaps = 3/951 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | |||||||| |||||| | ||||| ||||| || || |||||||| Sbjct 360583 AACCGTCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 360524 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||| ||| | | |||||| ||||| || || ||||| || ||||| Sbjct 360523 -TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGA 360465 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || || | ||||||||||| || || |||||||| || |||||| Sbjct 360464 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTAC 360405 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || ||| | || || ||||| || |||||||| || | | || ||||| Sbjct 360404 TTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATG 360345 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| || ||||||| | ||| |||| | |||||| | ||||| | Sbjct 360344 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 360285 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 || ||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 360284 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 360225 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 | ||| || || || ||||||||||| | || || ||| | |||| || ||||||| Sbjct 360224 TG-ATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCA 360166 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| || || || | ||||| | || |||||||| || ||||||| |||| | || Sbjct 360165 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 360106 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||| || || || |||||| | |||||||| ||||||||||| || || || ||||| Sbjct 360105 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGT 360046 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCG 175093 ||||| || || | ||| || ||||||||||| | || |||||| | || | Sbjct 360045 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 359986 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || || |||| ||| || || ||||||| ||||| ||||| ||||| || Sbjct 359985 GGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAAC 359926 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 ||||| ||||| || || || || || || || || |||||||||||||| ||| || Sbjct 359925 TTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 359866 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||| || || || | || |||||| | || || ||||| || || ||||||||||| Sbjct 359865 CAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTT 359806 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 ||| || | ||| || ||| ||||| |||||| | ||||||||||| |||||||| || Sbjct 359805 CACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATC 359746 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 ||| | || | |||||| | ||| | || |||||||| ||| || |||| | ||| Sbjct 359745 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAA 359686 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||||| |||||||| |||||||| | ||||| || |||||||| ||||| Sbjct 359685 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 359635 >seq10805 Length=1012358 Score = 419 bits (464), Expect = 3e-112 Identities = 529/724 (73%), Gaps = 2/724 (0%) Strand=Plus/Minus Query 176138 TTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTT 176197 |||| | |||||||||||||||||||| |||| || || || |||||| | ||||| || Sbjct 50207 TTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATT 50148 Query 176198 TGAACTGGCAAGACTCATTGGTATC-CGTCCCTACAACGCTATTGCATTCAGTGGTCCTA 176256 |||||| || | ||| | || || || || || || || |||||| || ||| | Sbjct 50147 TGAACTTGCTCG-CTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAA 50089 Query 176257 TCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTG 176316 | ||||| ||||| ||| || || | || ||||||||||| ||| |||||||||| Sbjct 50088 TTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTG 50029 Query 176317 CCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACA 176376 | || |||||||| || || || ||| ||||| | | ||| | || || || || | Sbjct 50028 CGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATA 49969 Query 176377 ACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTAC 176436 | |||||| |||||||||| ||||||||||||||||| ||| || | || | || || | Sbjct 49968 ATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGC 49909 Query 176437 TATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACA 176496 ||| ||| || ||||||| ||| || |||||||| ||| ||||||||| || | Sbjct 49908 TATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAA 49849 Query 176497 ACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGA 176556 |||| ||| ||| || | | ||||| | ||||| |||||||||||||| || || | Sbjct 49848 ACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTA 49789 Query 176557 ACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCT 176616 ||||||| ||||| |||||||| |||||||| ||| ||||| |||||| | || |||| Sbjct 49788 ACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 49729 Query 176617 TTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTG 176676 ||||||| ||||| || || | ||| | ||| | | |||| | | || || | Sbjct 49728 TTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAG 49669 Query 176677 CTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTG 176736 | || || || ||||||||||| || || ||| || || | ||||| |||||||||| Sbjct 49668 CCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTG 49609 Query 176737 AGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGG 176796 | ||||| |||||||||||||| || || ||| | ||||| || | | || ||||||| Sbjct 49608 AATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGG 49549 Query 176797 CACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTA 176856 | || ||||| || ||||| || ||||||| || || |||||||| | || | Sbjct 49548 CGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAA 49489 Query 176857 ACGC 176860 |||| Sbjct 49488 ACGC 49485 >seq6804 Length=382778 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAA 176729 || || || || || || ||||||||||| || || |||||| || | ||||| || Sbjct 63706 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGAAA 63647 Query 176730 GATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCA 176789 |||||||| ||||| | |||||||||||| || || ||| | ||||| || | | || Sbjct 63646 GATCCTGAATTTGAGAATTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 63587 Query 176790 TGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCT 176849 |||||||| || ||||| || ||||| || ||||||| || || |||||||| Sbjct 63586 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 63527 Query 176850 AGAGGTAACGC 176860 | || ||||| Sbjct 63526 CGTGGAAACGC 63516 >seq6913 Length=1432529 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 176301 TCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTT 176360 |||| || ||||||| || |||||||| | | || ||| | ||| | | ||| Sbjct 164057 TCTTGTTGATTCTTTGAGCCTCGTTTTGGTGTAGTGACGATATTTCGGTTCATCCTTTTT 163998 Query 176361 CTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATA 176420 | || || | | || |||||| | |||||||| ||||||||||||||||||||| || Sbjct 163997 TTCCAAGGGTCTTATAAGTGGACATTAAACCCCTTTCATATGATGGGAGTTGCTGGTGTA 163938 Query 176421 CTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAA 176480 |||||| | | |||| ||| || |||||| |||| | |||||||| ||| |||| Sbjct 163937 TTAGGTGCTGTTCAGCTATGTGCTATTCATGGCACTACTATAGAAAATACTTTATTTGAA 163878 Query 176481 GATGGAGA 176488 ||||| || Sbjct 163877 GATGGTGA 163870 Score = 89.7 bits (98), Expect = 8e-13 Identities = 133/189 (70%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 176301 TCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTT 176360 |||| | ||||||||| || |||||||| | ||||| || | ||| | | || Sbjct 225175 TCTTGTTAGTTCTTTGCGCCTAGTTTTGGTGTAGTGGCAATATTACGGTTCATCCTTCTT 225116 Query 176361 CTT-----CAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTG 176415 ||| || || | | || |||||| |||||||||| ||||||||||||||||| Sbjct 225115 CTTTTTTTCAAGGGTCTTATAAGTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCT 225056 Query 176416 GTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTAT 176475 || || | || | || || |||| ||| || ||| ||| |||| | |||||||| || Sbjct 225055 GTGTATTGGGCGCTGCTCTGCTATGTGCTATTCATAGCGCTACTATAGAAAATACTTAAT 224996 Query 176476 ATGAAGATG 176484 ||| |||| Sbjct 224995 TTGAGGATG 224987 >seq8585 Length=236491 Score = 102 bits (112), Expect = 1e-16 Identities = 187/269 (70%), Gaps = 9/269 (3%) Strand=Plus/Minus Query 176003 TTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTA 176061 ||||||| | || || ||| ||||| | || || || || |||||||||||| || | Sbjct 27801 TTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTT 27743 Query 176062 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGC 176121 | | |||||| | | |||| |||||||||||| | || || || || || ||| Sbjct 27742 TAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGT 27683 Query 176122 TCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGAT 176181 ||| | || || |||||| | |||||||||||||||||||| |||| || || || | Sbjct 27682 GTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTT 27623 Query 176182 TCATGCTTCGTCAGTTTGAACTGGCAAGACTCA-TTGGTATCCGTCCCTACAACGCTATT 176240 |||| | |||| || |||| ||||| || | | | || || || || || Sbjct 27622 TCATAATCTGTCAATTCAAACT-----TACTCACTTTATTTGC-ACCTTATAATGCAATA 27569 Query 176241 GCATTCAGTGGTCCTATCGCTGTATTTGT 176269 |||||| || ||| || | ||| ||||| Sbjct 27568 GCATTCTTTGCTCCAATTGTTGTTTTTGT 27540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729793513750200