Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq6848 589 2e-163 seq10805 396 3e-105 seq8585 102 9e-17 seq6913 87.8 2e-12 seq9227 84.2 2e-11 seq5789 82.4 8e-11 >seq6848 Length=375620 Score = 589 bits (652), Expect = 2e-163 Identities = 728/989 (74%), Gaps = 5/989 (1%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||| | ||| ||||| || | ||||| || || | |||||||| || || || Sbjct 331159 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 331218 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || ||| | ||| | ||||| ||||| || || |||||||| | ||| |||| Sbjct 331219 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCT-CTCC 331276 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 331277 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 331336 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || || |||||||| || | || |||| || || ||| | || || || || || Sbjct 331337 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 331396 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 331397 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 331456 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | || ||||| ||||| ||||||||| | ||| Sbjct 331457 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 331516 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| |||||||| || || || || ||||| |||| Sbjct 331517 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 331576 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | |||| || |||||||||| ||| || |||| ||||||||| || || Sbjct 331577 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 331636 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 |||||||||||| |||| |||| |||||||||| || || |||||||||||||||||||| Sbjct 331637 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 331696 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 ||||| ||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 331697 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 331756 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || || | || | | || | ||||| || |||| || || || | Sbjct 331757 TTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 331815 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 |||||| ||||| ||||| |||||||| ||||||||||| || || || ||||| || | Sbjct 331816 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 331875 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 | || |||||||||||||| ||| |||||||| || ||||| || || |||||||| | Sbjct 331876 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 331935 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| |||||||| || || ||||||||||| || | || | || ||||| |||| Sbjct 331936 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 331995 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 || | || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 331996 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 332055 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 ||||||| ||| | | || ||||| || |||||||||||||||||||| ||||| | Sbjct 332056 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 332115 Query 159337 CACACAACTTCCCACTCGACCTTGCTGCT 159365 | || |||||||| || ||||| |||||| Sbjct 332116 CTCATAACTTCCCTCTAGACCTAGCTGCT 332144 Score = 589 bits (652), Expect = 2e-163 Identities = 728/989 (74%), Gaps = 5/989 (1%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||| | ||| ||||| || | ||||| || || | |||||||| || || || Sbjct 360610 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 360551 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || ||| | ||| | ||||| ||||| || || |||||||| | |||||||| Sbjct 360550 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 360492 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 360491 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 360432 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || || |||||||| || | || |||| || || ||| | || || || || || Sbjct 360431 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 360372 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 360371 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 360312 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | || ||||| ||||| ||||||||| | ||| Sbjct 360311 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 360252 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| | |||||| || || || || ||||| |||| Sbjct 360251 TCTGGGTATGCGTCCTTGGATTGCTGTTG-ATATTCAGCTCCTGTTGCAGCAGCGACTGC 360193 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | |||| || |||||||||| ||| || |||| ||||||||| || || Sbjct 360192 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 360133 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 |||||||||||| |||| |||| |||||||||| || || |||||||||||||||||||| Sbjct 360132 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 360073 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 ||||| ||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 360072 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 360013 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || || | || | | || | ||||| || |||| || || || | Sbjct 360012 TTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 359954 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 |||||| ||||| ||||| |||||||| ||||||||||| || || || ||||| || | Sbjct 359953 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 359894 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 | || |||||||||||||| ||| |||||||| || ||||| || || |||||||| | Sbjct 359893 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 359834 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| |||||||| || || ||||||||||| || | || | || ||||| |||| Sbjct 359833 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 359774 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 || | || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 359773 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 359714 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 ||||||| ||| | | || ||||| || |||||||||||||||||||| ||||| | Sbjct 359713 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 359654 Query 159337 CACACAACTTCCCACTCGACCTTGCTGCT 159365 | || |||||||| || ||||| |||||| Sbjct 359653 CTCATAACTTCCCTCTAGACCTAGCTGCT 359625 >seq10805 Length=1012358 Score = 396 bits (438), Expect = 3e-105 Identities = 528/731 (72%), Gaps = 2/731 (0%) Strand=Plus/Minus Query 160187 TGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTT 160246 |||| |||||| || ||||| ||||| |||| ||||| || |||||| | ||||| ||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 160247 GAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 160305 ||||| || || || || | | || ||||| ||||| || || ||||||| ||| || Sbjct 50146 GAACTTGCTCGCTCGGTTCAAT-TGCGACCTTATAATGCAATAGCATTCTCTGCTCCAAT 50088 Query 160306 TGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGC 160365 |||||| ||||| |||||||| || || ||| | |||||||| ||||||| || || Sbjct 50087 TGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 50028 Query 160366 TCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAA 160425 || ||||| || || || || ||| ||||| | | || | ||||| ||||| || Sbjct 50027 GCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAA 49968 Query 160426 CTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCT 160485 ||||| | |||||||| ||||||||||||||||| ||| || | || | || ||||| Sbjct 49967 TTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCT 49908 Query 160486 CAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAA 160545 ||||||| ||||||| ||| ||||| || || | | ||||||||| || ||||| Sbjct 49907 ATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAA 49848 Query 160546 TACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAA 160605 || || || ||| | | || || | ||||| || ||||| |||||||| || || Sbjct 49847 CACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAA 49788 Query 160606 CCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTT 160665 |||||| ||||| || ||||| || |||| ||||| || || || ||| | ||||| || Sbjct 49787 CCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTT 49728 Query 160666 CATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGC 160725 ||||| ||||| || || | ||| | |||| | |||| | | || || || Sbjct 49727 TATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGC 49668 Query 160726 TCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGA 160785 || || || |||||||| || ||||| || || || | ||||| |||||||| || Sbjct 49667 CCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGA 49608 Query 160786 ATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGC 160845 ||||||||| |||||||| || || || || | || || || | ||||| ||| | || Sbjct 49607 ATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGC 49548 Query 160846 ACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAA 160905 || || || || ||||| ||| |||| ||||| || || ||||| || | || || Sbjct 49547 GGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAA 49488 Query 160906 CGCCCTTTAAT 160916 ||| ||||||| Sbjct 49487 CGCTCTTTAAT 49477 >seq8585 Length=236491 Score = 102 bits (112), Expect = 9e-17 Identities = 195/282 (69%), Gaps = 9/282 (3%) Strand=Plus/Minus Query 160038 ATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACAGCGTCAGTTAGCACT 160096 ||||| | || ||||||||| | || || ||||| ||| | || || ||||| ||| Sbjct 27814 ATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCCGCAGTTTCGACT 27756 Query 160097 CCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGA 160155 || ||| | | | | |||||| || || || || ||||||||||| || ||||| || Sbjct 27755 CCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGA 27697 Query 160156 TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTT 160215 ||| | ||| ||| | || || || |||| |||||| || ||||| ||||| || Sbjct 27696 TTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTCCACGGTGCTTT 27637 Query 160216 CGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCC 160275 || ||||| || ||||| || |||| || |||| | | | || | | || Sbjct 27636 CGGACTAATAGGTTTCATAATCTGTCAATTCAAACTTACTCACTTTATTTGCA-----CC 27582 Query 160276 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGT 160317 ||| ||||| || || |||| || ||| |||| ||| ||||| Sbjct 27581 TTATAATGCAATAGCATTCTTTGCTCCAATTGTTGTTTTTGT 27540 >seq6913 Length=1432529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 160398 TCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAG 160457 |||| || |||| |||| | | | || ||||| | |||||||| ||||||||||||| Sbjct 164005 TCCTTTTTTTCC---AAGGGTCTTATAAGTGGACATTAAACCCCTTTCATATGATGGGAG 163949 Query 160458 TTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACA 160517 |||||||| || |||| | | | ||| |||| || |||||| |||| |||| || | Sbjct 163948 TTGCTGGTGTATTAGGTGCTGTTCAGCTATGTGCTATTCATGGCACTACTATAGAAAATA 163889 Query 160518 CACTGTATGAAGATGGAGA 160536 | | | ||||||||| || Sbjct 163888 CTTTATTTGAAGATGGTGA 163870 >seq9227 Length=192999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 30139 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 30080 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 30079 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 30020 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTAT 160057 | ||| |||||||| |||||| | || ||||||||| Sbjct 30019 GTAACTTCATGGTATACTCATGGATTAGCCAGTTCCTAT 29981 >seq5789 Length=532619 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 159549 ATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCT 159608 ||| | || |||||||| ||||| || | ||| |||||| ||||| | ||||| ||| Sbjct 479048 ATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCT 479107 Query 159609 TGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAAT-CTTT 159667 || | ||| |||| || ||| | || || |||||||| || ||| |||| Sbjct 479108 TGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT 479167 Query 159668 CTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATC 159727 || ||| ||||||||| | | ||||| ||| |||||||||||| | || || ||| Sbjct 479168 CT-GGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAG 479226 Query 159728 AGACGTAACTAT 159739 || || ||||| Sbjct 479227 TGATGTTACTAT 479238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552370598203200