Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5601 125 6e-24 >seq5601 Length=566945 Score = 125 bits (138), Expect = 6e-24 Identities = 380/582 (65%), Gaps = 4/582 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||||||||| || || | || || ||| |||||||||| ||||| | || ||||||| Sbjct 476971 TGTTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTT 476912 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || || || || || || | | ||| | || ||| | ||| | Sbjct 476911 GGACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAGTGGGAATCCCTAACGGCCG 476852 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || ||||| || || | || | || || || || || ||||| || ||| Sbjct 476851 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGAATCGTCC 476792 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 ||||| | | |||| | ||||||| ||| | | || || || || | Sbjct 476791 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 476732 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | || || ||||| ||||| || || || || || ||||||||| || || |||| | Sbjct 476731 ACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAA 476672 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-T 44065 ||||||| ||| | |||| ||| || || ||| || | ||||| || || | Sbjct 476671 CGTACATAAAAAACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGT 476612 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 ||| | | | || || || |||||||| || ||||| | || | || | Sbjct 476611 GCGTTGCCAAA-AAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGACATTCGCG 476553 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG-GC 44184 || |||| | |||||||| |||||||| || ||||| || || | |||| | || Sbjct 476552 GAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCGGG-TAGTTTCTGCGC 476494 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||||||||||| || || || || || ||||| || | || || || || ||| |||| Sbjct 476493 GATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCTAAT 476434 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || |||||||| | || |||||||| || |||||||| Sbjct 476433 CTCGCGAGATGAAGGACTCCACTGCGATTTCGCGTGCTTGTT 476392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397383751814575