Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5889 129 5e-25 seq3221 120 3e-22 seq6246 113 4e-20 seq1669 113 4e-20 seq13803 107 2e-18 seq7271 102 7e-17 seq13804 98.7 8e-16 seq9249 86.0 5e-12 >seq5889 Length=513596 Score = 129 bits (142), Expect = 5e-25 Identities = 178/248 (72%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | ||| || || ||||| |||||||| ||| Sbjct 196890 TGCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGG 196831 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||||||||||||||| |||||| | || |||||||| || ||||| | Sbjct 196830 CCAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAG 196771 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | || | ||||| | | || | Sbjct 196770 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 196711 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 |||| ||||| || | ||||| || || |||||||| ||||| ||||| | | ||||| Sbjct 196710 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCGTT--TAAAA 196653 Query 27259 ATTTATTA 27266 ||| ||| Sbjct 196652 GTTTCTTA 196645 >seq3221 Length=646307 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||| ||| || | |||| | |||||||| || || || Sbjct 220196 CGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCC 220255 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | || |||||||| |||||||| || | ||||| || || ||||||| || Sbjct 220256 GGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTT 220315 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | ||||| | | || ||||| ||||| || | |||||| || || || Sbjct 220316 CACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGT 220375 Query 27230 TTTCACAAAGATTTGCATA 27248 |||||||||||| |||||| Sbjct 220376 TTTCACAAAGATCTGCATA 220394 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || ||||||||||| ||||| ||| || |||| |||||||||| || Sbjct 211868 ATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTG 211927 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || || | ||||||||||| || |||||||| | ||||| || || |||||| Sbjct 211928 CTTCCCTGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTT 211987 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | | || ||||| || || || | ||||| || Sbjct 211988 GGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGT 212047 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| || ||||| Sbjct 212048 GAGGGTTTTCACAAATATCTGCAT 212071 >seq6246 Length=1554407 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || ||| || |||| |||||||| || || Sbjct 817892 GTTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTTCC 817834 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 817833 GGCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTT 817774 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || ||||| ||||| | || ||||| || || Sbjct 817773 GACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGT 817714 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||| ||||| ||||| ||||| Sbjct 817713 TTTCACGAAGATCTGCATGGCTGC 817690 >seq1669 Length=710980 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || ||| || |||| |||||||| || || Sbjct 59021 GTTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTTCC 59079 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 59080 GGCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTT 59139 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || ||||| ||||| | || ||||| || || Sbjct 59140 GACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGT 59199 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||| ||||| ||||| ||||| Sbjct 59200 TTTCACGAAGATCTGCATGGCTGC 59223 >seq13803 Length=1821802 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| || | | ||| ||||||||||||| || || Sbjct 337601 GTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTCGAGCTGCTTGCCT 337542 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | |||||| || || |||||| || Sbjct 337541 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTG 337482 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || | ||||| | || ||||| || ||| Sbjct 337481 ACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 337422 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 337421 TTCACGAAGATCTGCAT 337405 >seq7271 Length=339586 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | || || || || || ||||| ||||| || || |||| | || || Sbjct 55431 ACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCAG-CAAGTGTGCGACCATCCTC 55373 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||| || | || || | ||| ||||| || || | || || || || Sbjct 55372 GAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTG 55313 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | || | ||||| | | |||||| || || ||||| | || Sbjct 55312 GATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTT 55253 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||||||||||||||||||||| Sbjct 55252 GCCGGTGAGAGTTTTCACAAAGATTTGCAT 55223 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || ||||| |||||||| | | | || | ||||| Sbjct 98828 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCTTCT 98769 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| || | ||||||||| || || | ||||| || || | Sbjct 98768 AGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 98709 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | |||||| || | |||||||| || Sbjct 98708 ATCTTGGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 98649 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||||||||| || ||||| Sbjct 98648 CCAGTCAGGGTTTTCACAAAAATCTGCAT 98620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || |||||||| | | || | ||||| Sbjct 56115 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCATCTTCA 56056 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| ||||| | || | | ||||||||| || || | ||||| || || | Sbjct 56055 AGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 55996 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | |||||| || | |||||||| || Sbjct 55995 ATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 55936 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||||||||| || ||||| Sbjct 55935 CCAGTCAGGGTTTTCACAAAAATCTGCAT 55907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || ||||||| | ||| ||||| || || | |||||| || Sbjct 95361 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 95302 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| ||||| | || | ||||| | | ||| || || ||||| || Sbjct 95301 TCTTGAATTTTGGCTTTCACATTGTCAATGGTGTCAGAGCTTTCTACCTCAAGAGTGATT 95242 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || ||||| ||||||||||| || |||||| Sbjct 95241 GTTTTTCCTGTCAGGGTTTTCACAAAAATCTGCATA 95206 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || ||||||| | ||| ||||| || || | |||||| || Sbjct 56289 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 56230 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||||| | | || | ||||| | |||||| || ||||| || Sbjct 56229 TCTTGAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATT 56170 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || || |||||||||||||| ||||| Sbjct 56169 GTTTTTCCGGTGAGCGTTTTCACAAAGATCTGCAT 56135 >seq13804 Length=830140 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || | ||||| |||| |||||||| || ||| Sbjct 395782 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCG 395723 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| || ||||| || | || || || || ||||||| || Sbjct 395722 GCGAAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTG 395663 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || ||||| || | ||||| |||| |||| Sbjct 395662 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTT 395603 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 395602 TTCACAAAGATCTGCAT 395586 >seq9249 Length=1184332 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || | ||||| |||| |||||||| || || Sbjct 868028 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCA 867969 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| || |||| || | || || ||||| |||||| || Sbjct 867968 GCGAAGATCAGCCGCTGCTGGTCCGATGGAATCCCTTCCTTATCCTGGATCTTAGCCTTG 867909 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || ||||| || | ||||| |||| |||| Sbjct 867908 ACATTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTT 867849 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 867848 TTCACAAAGATCTGCAT 867832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424857156885480