Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5989 111 2e-19 seq5924 105 8e-18 seq10828 102 1e-16 seq9360 93.3 5e-14 seq7036 91.5 2e-13 seq13915 86.0 8e-12 >seq5989 Length=495927 Score = 111 bits (122), Expect = 2e-19 Identities = 172/241 (71%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 111930 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 135090 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 135031 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047 |||| | |||||||||| | | |||||| | ||| |||||||||| || ||| ||| Sbjct 135030 GAACCATCTTTGGGACATCATATGGTATGTTTTAAAG-CAGAATCAATATCATCCTTGTG 134972 Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107 || || || | |||| ||| ||||| | ||| || |||| | | | || | || Sbjct 134971 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 134913 Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 134912 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 134853 Query 112167 G 112167 | Sbjct 134852 G 134852 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 111930 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 124548 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 124489 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 124488 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 124429 Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107 || || || | |||| ||| ||||| | ||| || |||| | | | || | || Sbjct 124428 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCGTCCCTTGGA- 124370 Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 124369 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 124310 Query 112167 G 112167 | Sbjct 124309 G 124309 >seq5924 Length=8700 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 111930 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 7518 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 7577 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 7578 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 7637 Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107 || || || | |||| ||| ||||| | ||| || |||| | | | || | || Sbjct 7638 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 7696 Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 7697 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 7756 Query 112167 G 112167 | Sbjct 7757 G 7757 >seq10828 Length=125459 Score = 102 bits (112), Expect = 1e-16 Identities = 317/489 (65%), Gaps = 4/489 (1%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || | | | ||| |||||| || ||| | | ||||| || || Sbjct 17924 ATCAAAACGTCCAGGCCTCAATAAGGCAGAATCAAGAATGTCCGCCCTGTTAGTTGCAGC 17865 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | ||||| |||||||| || || | | || |||| Sbjct 17864 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAG 17805 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629 || || ||||| |||||||| || | | | | |||| | | ||| | || || Sbjct 17804 GGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 17747 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | || ||||| || || || || ||| | | || ||| Sbjct 17746 GCATCAATTTCATCCACAAATACAATGCAAGGAGCGTTCTCTTTGGCCTTCTTGAAAAGA 17687 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || || ||||| ||||||||||||||||| ||||| | | | || Sbjct 17686 TCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 17627 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || || || ||| || || ||||| || || Sbjct 17626 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTT 17567 Query 11810 CCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTC 11869 ||||| ||| ||||||| | || || || || ||| | || | ||||| Sbjct 17566 CCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAATAGCAGTAAATCTC 17507 Query 11870 TCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCC 11929 || || | ||| || || ||||| | || | || | ||| ||| | |||| || Sbjct 17506 TCAGGCTTCTTAAGGAACTCCACCACTTCCATGAAATCTTGTTTTGCCTCATCAACTCCG 17447 Query 11930 TCAACATCA 11938 |||||||| Sbjct 17446 GCAACATCA 17438 >seq9360 Length=2047533 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||||||||| || || | || |||||||| || || ||||| | || Sbjct 1278002 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1277943 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 1277942 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1277883 Query 122790 CGCAAACGC 122798 |||||||| Sbjct 1277882 AGCAAACGC 1277874 >seq7036 Length=357795 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 || ||| | ||||||||| |||||||| || || || || | ||| || | ||| | Sbjct 206683 CACCTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCG 206742 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 ||| |||||| | | |||||| | | ||||||||||||| ||| ||| || || | Sbjct 206743 TTGAGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAAC 206802 Query 112057 TGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 112116 || |||| ||| ||||| | || || |||| | | | || | || | || ||| Sbjct 206803 AGCAACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAG 206860 Query 112117 A--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 206861 AGGTAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 206913 >seq13915 Length=807303 Score = 86.0 bits (94), Expect = 8e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||| ||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 137021 AAAGCCATTCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 136962 Query 11599 CATACCACCAGCACTGCGTTG-CTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 || || || | | || || ||||| |||||||| |||||||| | ||||||| Sbjct 136961 TCTAAGCCCTGCTCCTCTCTGTCTCCCCCACAGCATCAATTTCATCAATAAGCACAATAC 136902 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 ||||| || ||| | ||||| | ||| | || || || |||||||||| Sbjct 136901 ATGGTGCCTTCGGTTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCCACACCAA 136842 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAG 11744 |||||| ||| ||||| | || ||||| Sbjct 136841 CAAACAACTCAACAAACTCTGGGGCAG 136815 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 460025 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 459968 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 459967 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 459908 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| || ||| | ||||| | ||| | || || || || |||||| Sbjct 459907 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 459848 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAG 11744 ||||||| ||| ||||| | || ||||| Sbjct 459847 ACAAACAACTCAACAAACTCTGAGGCAG 459820 Score = 82.4 bits (90), Expect = 1e-10 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||| ||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 141628 AAAGCCATTCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 141569 Query 11599 CATACCACCAGCACTGCGTTG-CTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 || || || | | || || ||||| |||||||| |||||||| | ||||||| Sbjct 141568 TCTAAGCCCTGCTCCTCTCTGTCTCCCCCACAGCATCAATTTCATCAATAAGCACAATAC 141509 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 ||||| || ||| | ||||| | ||| | || || || |||||||||| Sbjct 141508 ATGGTGCCTTCGGTTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCCACACCAA 141449 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAG 11744 |||||| ||| ||||| ||| ||||| Sbjct 141448 CAAACAACTCAACAAA-CTTGGGGCAG 141423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627914911284000