Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10828 89.7 6e-13 seq9360 89.7 6e-13 >seq10828 Length=125459 Score = 89.7 bits (98), Expect = 6e-13 Identities = 266/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 17876 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 17817 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGT 14230 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 17816 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 17759 Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCA 14290 || | || ||||| ||||||||||| | || || || || || || || ||| Sbjct 17758 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCGTTCTCTTTGGCC 17699 Query 14291 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 17698 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 17640 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | | | | || | || || || || | |||||| || || || ||| || | Sbjct 17639 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 17581 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCAC 14468 | |||||||| || ||||| || ||||||| |||| ||| || | || ||| Sbjct 17580 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAA 17521 Query 14469 TGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTC 14511 | || | | ||||| | |||||||| ||||| | ||| Sbjct 17520 TAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTTC 17478 >seq9360 Length=2047533 Score = 89.7 bits (98), Expect = 6e-13 Identities = 185/271 (68%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 1278002 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1277943 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 1277942 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1277883 Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 130205 || ||||| | | | ||| || |||| | | | || | ||| || | || Sbjct 1277882 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 1277827 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 ||||| || || || ||| || || || |||| ||| || | |||||| |||| Sbjct 1277826 CCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCT 1277767 Query 130266 TTTCTGATGGA-TCTTTGATGTACTTATCTA 130295 |||| | ||| ||||||||||| | |||| Sbjct 1277766 TTTC-GTCGGAGTCTTTGATGTAAGTTTCTA 1277737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618319900487400