Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10828 145 9e-30 seq5989 100 3e-16 seq7917 98.7 1e-15 seq5924 95.1 1e-14 seq7036 86.0 7e-12 seq13915 82.4 9e-11 >seq10828 Length=125459 Score = 145 bits (160), Expect = 9e-30 Identities = 314/463 (68%), Gaps = 14/463 (3%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 17894 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 17835 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 17834 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 17777 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 17776 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 17717 Query 9734 G----GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | ||| ||| || | ||| ||| ||||| || || | || || ||||| Sbjct 17716 GGAGCGTTCTCTTTGGC---CTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACC 17661 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 |||||||||||| ||||| | | | | | || | || || || ||| | ||||| Sbjct 17660 AACAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCAC 17602 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | ||||| || ||| ||||||||||| || || ||||| ||| |||| || ||| Sbjct 17601 CAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACAC 17542 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 | |||||| || ||| | || |||||||||| | |||||| || ||||| | Sbjct 17541 CCTTTGGAATACGAGCTCCAATAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCA 17482 Query 9969 TTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||| || || | ||| || | |||| || ||||||| Sbjct 17481 CTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 17439 >seq5989 Length=495927 Score = 100 bits (110), Expect = 3e-16 Identities = 156/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| ||||||||||||||| | ||| || | || || | | || Sbjct 134861 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 134920 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| | |||| || ||| | ||||| ||| | || | || || ||||| ||| Sbjct 134921 AAGGTTG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACAAGGA 134979 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||||| ||| | |||||| | | |||||||||| | ||||| || || Sbjct 134980 TGATATTGATTCTG-CTTTAAAACATACCATATGATGTCCCAAAGATGGTTCACCCATGC 135038 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || || |||||||| || ||||| ||||| Sbjct 135039 ATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 135077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| ||||||||||||||| | ||| || | || || | | || Sbjct 124318 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 124377 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| | |||| || ||| | ||||| ||| | || | || || ||||| ||| Sbjct 124378 ACGGTTG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACAAGGA 124436 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||||| | | |||||| | | |||||||||| | ||||| || || Sbjct 124437 TGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCCATGC 124496 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || || |||||||| || ||||| ||||| Sbjct 124497 ATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 124535 >seq7917 Length=1319861 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||| | ||||||| ||||||||| ||||||||||||||| | || ||| | Sbjct 95341 AGAGATTTTGACTTTGATTATTTTGGCTTCAAAACCCTTGAGAGGTCGTACCTTTTGAAG 95282 Query 104198 CTCGATGGT-GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || | ||| | |||| ||||| ||||||| ||| | || | | ||||| Sbjct 95281 ATGGACAGTAGAGTTG-TAGAAAGGCCACAACACATGTTGATGAGGGTTTCTGTTGGTAT 95223 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| || |||| |||||||| || | |||||| | |||||| || | ||| Sbjct 95222 TCACAAAGATGACACTGATTCTGCTCTGAAAACATACCATTTGATGTCTCAGCATTGGTT 95163 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| || || |||||||| |||||||| ||||| ||| ||||| Sbjct 95162 CACTCATGCTACTCCAACCCTTTTCAATGCAGGTACTCCACAGCCCCA 95115 >seq5924 Length=8700 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| ||||||||||||||| | ||| || | || || | | || Sbjct 7748 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 7689 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| | |||| || ||| | ||||| ||| | || | || || ||||| ||| Sbjct 7688 AAGGTTG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACAAGGA 7630 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||||| | | |||||| | | |||||||||| | ||||| || || Sbjct 7629 TGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCCATGC 7570 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || || |||||||| || ||||| ||||| Sbjct 7569 ATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 7531 >seq7036 Length=357795 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATG 104204 |||| || ||||||||| |||||||||| |||| | ||| |||| || | | | | | Sbjct 206904 GACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAGGTC-CAAGG 206846 Query 104205 GTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGG 104264 ||| | |||| || || | ||||| ||| | || || | || ||||| || Sbjct 206845 AAAAGTTG-TAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGATTCACAAGG 206787 Query 104265 AAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACG 104324 | ||||||||||||| | | |||||| | | |||||| ||| | ||| | || | Sbjct 206786 ATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAACGATGGTTTACCCATG 206727 Query 104325 CAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || | || || || || |||||||| ||||||||| |||| Sbjct 206726 CATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCA 206687 >seq13915 Length=807303 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/217 (70%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 460025 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 459968 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 459967 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 459908 Query 9731 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || ||| || || | |||| ||| | ||||| ||| || | ||||| || Sbjct 459907 CACGGTGCCTT--CGATTTGGCCTTCTCAAACAAATCCCT--CACTCTGGATGCGCCAAC 459852 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 459851 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 459815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583152058314600