Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5601 141 1e-28 seq9360 111 2e-19 seq5512 95.1 1e-14 >seq5601 Length=566945 Score = 141 bits (156), Expect = 1e-28 Identities = 378/564 (67%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| |||||||| | |||||| ||| Sbjct 476969 TTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTTGG 476910 Query 59622 TCCGTCGAGGAGATTGACCT--CGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACG 59679 | | |||||| | ||||| ||| ||| | | | | ||||| || | || Sbjct 476909 ACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG--TGGGAATCCCTAACGGCCG 476852 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 ||||| | || ||||||| | || || ||||||||||| || || ||||| || Sbjct 476851 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGAATCGTCC 476792 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 | ||||| | | | | || || || ||||| | ||||||| || | |||| Sbjct 476791 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 476732 Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || ||| || |||| ||||||||||| | |||||||||| | | || Sbjct 476731 ACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAA 476673 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || | || | | || || ||| || | | | || || ||| | || ||| | || Sbjct 476672 ACGTACATAAAAAACTCCGACGAAAAGAGCCGCT-TATTTCGCGCCTTTGAAACGGTGCC 476614 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 || ||| |||| || || |||||| | | ||||| || || |||| |||| Sbjct 476613 GTGC-GTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATT 476557 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | || ||||| ||||| ||||||||||| || |||||||| || ||||| Sbjct 476556 CGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGTAGTTTCTG 476497 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||| | |||||||| || | ||||||||||| | ||||| |||||||| Sbjct 476496 CGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCT 476437 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 || || || || || || ||||| Sbjct 476436 AATCTCGCGAGATGAAGGACTCCA 476413 >seq9360 Length=2047533 Score = 111 bits (122), Expect = 2e-19 Identities = 492/758 (65%), Gaps = 22/758 (3%) Strand=Plus/Plus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| |||| ||| ||| | || || ||||||||||| || || || || || Sbjct 1277562 GACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTC 1277621 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || || | | | | || | ||| |||||| | |||||||| || | ||| Sbjct 1277622 CTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTC 1277681 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | || ||| || |||| ||||||||||| | ||||||||| | | || Sbjct 1277682 TACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 1277740 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | | |||| || | || || ||| |||| || | ||||| |||||| | || Sbjct 1277741 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 1277800 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 | || || | | ||||| ||||| | | ||||| || || |||| | || Sbjct 1277801 CTGC-GTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACT--TT 1277857 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | | || || ||||| |||||||| || || |||||||| || || || Sbjct 1277858 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 1277917 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || |||||||||||||| || | |||||||| | | ||||| |||||| | Sbjct 1277918 CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTT 1277977 Query 60095 GATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATT 60154 ||| || || || ||||| ||||| || || || ||| | | | | || |||| Sbjct 1277978 GATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGC-GTGCCTGT-TGTACA-GTTTATT 1278034 Query 60155 G-GAAAAATGCCCTTCCAAG-GATA-TTCACAAGATTGTTCAGTGGGCTTGTGAAG-TGG 60210 | | | || || | | | || | | | | | || || ||| ||| || | | Sbjct 1278035 GAGGACAAAGCTAAGCGAGGAGAGAGTGAAGGCGTTAGTGAAGGAGGC-GGTGGAGATAG 1278093 Query 60211 AGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA- 60269 |||| ||||| | || ||||| || ||| | | || ||| | ||||||| Sbjct 1278094 AGAGAGAGTTTGTGTGCGATGCGCTGCCGTGCGCGTTGGTGGGGATGAA---TGGAGAAT 1278150 Query 60270 --ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGAC 60327 |||| |||||||| ||||||||||||| | | ||| | |||| | || Sbjct 1278151 TGATGAGTCAGTACATAGAGTTTGTCGCGGATAGATTGTTGGGTGCGCTTGGGTACGGGA 1278210 Query 60328 CAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 | ||||| ||| || ||||| || ||||||||| |||||| | ||||||||| Sbjct 1278211 AGCTGTACGGAGTGGCGAATCCTTTTGATTGGATGGAGCTGATCTCGCTCCAAGGGAAGA 1278270 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 | || |||||||| ||| | || ||||| ||| |||| Sbjct 1278271 CTAATTTCTTTGAAAAGAGAGTTGGGGAATATCAAAAG 1278308 >seq5512 Length=582012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 371/567 (65%), Gaps = 20/567 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | |||||| || | |||| |||| |||||||| | |||||| ||| Sbjct 61759 TTTCCAATCCAGTACCCAGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTTGG 61700 Query 59622 TCCGTCGAGGAGATTGACCTC--GCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACG 59679 | | |||||| ||||||| || ||| | | | | ||||| || | || Sbjct 61699 ACGGCAGAGGAGCTTGACCTGTTGCAGGACATCCGCCAG--TGGGAATCCCTAACCGCCG 61642 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 ||||| | || ||||||| || || ||||| ||||| || || ||||| || Sbjct 61641 ACGAGAAACACTTCATCACACACGTGCTCGCCTTTTTCGCTGCCTCGGACGGAATCGTCC 61582 Query 59740 TGGAAAATAT---AGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 | ||||| | || || || || || || ||||| | |||||| || | | Sbjct 61581 TCGAAAACCTCGCAGCCA-GA--TTCATGAAAGAAGTCCATGTCTTCGAGGCGCGTGCCT 61525 Query 59797 TCTAC-GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 ||||| || | | ||| || | || |||||||||| | |||||||||| | | Sbjct 61524 TCTACAGCTTCCAAATCGC-CATCAAGAACGTCCACTCCGAAATGTACTCGCTCCTTCTA 61466 Query 59856 GATAAGTTGGTCAAGGATC-CGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACGT 59913 || | | | || | | | || || ||| || | | | || || ||||| || ||| Sbjct 61465 GAAACTTACATAAAAAAACTCTGACGAAAAGAGCCGCT-TATTTCGCGCCATTGAAACGG 61407 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATC 59971 || |||| ||||| ||||| |||||| | | ||| || || |||| | Sbjct 61406 TGCCGTGAGTTGC-CAAAAGGCAGATTGGGCCCGAAATTAGATCGACGGCTCGGAGA--C 61350 Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||| | | | || ||||| ||||| || |||||||| || || ||||| ||| || Sbjct 61349 ATTCACGGAGAGACTGATAGCGTTTGCTTGTGTGGAAGGGATATTTTTCTCGGGCAGTTT 61290 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 ||| || || || ||| | ||||||||||| | |||||||| || | |||| ||||| Sbjct 61289 CTGCGCGATATTTTGGTTAAAAAAGCGTGGGTTAATGCCGGGGCTAACCATCTCAAACGA 61230 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||| || || || ||| | || ||||| Sbjct 61229 GCTAATCTCGCGAGACAAAGGACTCCA 61203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548422534407600