Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq6848 569 2e-157 seq7265 161 1e-34 seq10972 158 1e-33 seq6090 149 8e-31 >seq6848 Length=375620 Score = 569 bits (630), Expect = 2e-157 Identities = 701/954 (73%), Gaps = 3/954 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||||||||||||||| | ||||| || | | | || || | | ||| Sbjct 331193 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 331251 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| | || || || ||||| ||||||||||| ||||| || Sbjct 331252 TTTATTATCGCCTTCATTGCT-CTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTT 331310 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 331311 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA 331370 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || ||||| || |||||||| ||| | ||||| |||||| | ||| Sbjct 331371 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 331430 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 331431 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 331490 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || |||||||||||||| ||||||||| Sbjct 331491 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 331550 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | ||||||| || |||||| | |||| ||| ||||||||||| | Sbjct 331551 TCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 331610 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || || || ||||| |||||||| ||| |||||||||| Sbjct 331611 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 331670 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || |||||||||||||| ||| | || ||||| ||||| || || Sbjct 331671 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGC 331730 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 331731 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 331790 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || ||||||| |||||| ||||| ||||| || || || Sbjct 331791 ACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 331850 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| |||||||| ||||| || | |||||||| |||||| |||||| || Sbjct 331851 ATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 331910 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||||| || || | || || || | |||||||| ||||| Sbjct 331911 TCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 331970 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| | Sbjct 331971 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 332030 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| ||||| |||| ||||| ||||||||| Sbjct 332031 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGT 332090 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 332091 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 332144 Score = 569 bits (630), Expect = 2e-157 Identities = 701/954 (73%), Gaps = 3/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||||||||||||||| | ||||| || | | | || || | | ||| Sbjct 360576 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 360518 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| ||||||||||| ||||| || Sbjct 360517 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTT 360458 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 360457 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA 360398 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || ||||| || |||||||| ||| | ||||| |||||| | ||| Sbjct 360397 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 360338 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 360337 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 360278 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || |||||||||||||| ||||| ||| Sbjct 360277 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTG-ATAT 360219 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | ||||||| || |||||| | |||| ||| ||||||||||| | Sbjct 360218 TCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 360159 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || || || ||||| |||||||| ||| |||||||||| Sbjct 360158 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 360099 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || |||||||||||||| ||| | || ||||| ||||| || || Sbjct 360098 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGC 360039 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 360038 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 359979 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || ||||||| |||||| ||||| ||||| || || || Sbjct 359978 ACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 359919 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| |||||||| ||||| || | |||||||| |||||| |||||| || Sbjct 359918 ATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 359859 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||||| || || | || || || | |||||||| ||||| Sbjct 359858 TCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 359799 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| | Sbjct 359798 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 359739 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| ||||| |||| ||||| ||||||||| Sbjct 359738 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGT 359679 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 359678 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 359625 >seq7265 Length=2979 Score = 161 bits (178), Expect = 1e-34 Identities = 205/280 (73%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 1958 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 2017 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || ||||| || ||||| || || || | ||||| ||||| Sbjct 2018 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 2077 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAA-GAAGAAAGAACTTAGAA 19473 |||| || || || |||||| | | |||||| | ||||||| | | | Sbjct 2078 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAAGAAACGATTGCTTA 2135 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 |||| || || |||||| |||||||| || ||||||||||| |||||||| |||| Sbjct 2136 ATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTCCAA 2195 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 |||| ||| |||| ||||| |||||||||||| | || || Sbjct 2196 CAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 2235 >seq10972 Length=118478 Score = 158 bits (174), Expect = 1e-33 Identities = 206/283 (73%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 45185 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 45244 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || ||||| || ||||| || || || | ||||| ||||| Sbjct 45245 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 45304 Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470 |||| || || || |||||| ||| |||| | | | || ||||| | | Sbjct 45305 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 45360 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 ||||| || || |||||| |||||||| || ||||||||||| |||||||| | Sbjct 45361 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 45420 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||||| ||| |||| ||||| |||||||||||| | || || Sbjct 45421 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 45463 >seq6090 Length=481770 Score = 149 bits (164), Expect = 8e-31 Identities = 205/283 (72%), Gaps = 9/283 (3%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || || |||||| | | |||||||| Sbjct 1106 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 1047 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || || || | ||||| ||||| Sbjct 1046 AATCCATTTTGAATTTGATAAATG-ATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 988 Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470 |||| || || || |||||| ||| |||| | | | || ||||| | | Sbjct 987 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 932 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 ||||| || || |||||| |||||||| || ||||||||||| |||||||| | Sbjct 931 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 872 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||||| ||| |||| ||||| |||||||||||| | || || Sbjct 871 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 829 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 19383 GCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTGGTGGATTGGG----T 19438 || ||||| || || || | ||||| ||||| |||| || || || |||||| | Sbjct 34717 GCTTGTGAAGTATGCGTTCGGGTATGTCCTATAGATCTGCCTGTTGTTGATTGGAAATTT 34658 Query 19439 GATGAACAAACAGACAAAGAAGAAAGAACTTAGAAATTATTCGATAGACTTTGGAGCATG 19498 || |||| | | | || ||||| | | ||||| || || |||||| || Sbjct 34657 GA--AACAGATATTCGAA--AGAAACGATTGCTTAATTACAGTATTGATTTTGGAATTTG 34602 Query 19499 TATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTATCCATGACAGAAGA 19558 |||||| || ||||||||||| |||||||| |||||||| ||| |||| ||||| ||||| Sbjct 34601 TATTTTTTGTGGTAACTGCGTTGAGTATTGTCCAACAAATTGTTTATCAATGACTGAAGA 34542 Query 19559 ATATGAATTGGCTAC 19573 ||||||| | || || Sbjct 34541 ATATGAACTTGCGAC 34527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603381886012800