Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq6848 569 2e-157
seq7265 161 1e-34
seq10972 158 1e-33
seq6090 149 8e-31
>seq6848
Length=375620
Score = 569 bits (630), Expect = 2e-157
Identities = 701/954 (73%), Gaps = 3/954 (0%)
Strand=Plus/Plus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205
||||| |||||||||||||||| | ||||| || | | | || || | | |||
Sbjct 331193 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 331251
Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265
||||| | || || ||||| | || || || ||||| ||||||||||| ||||| ||
Sbjct 331252 TTTATTATCGCCTTCATTGCT-CTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTT 331310
Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325
| ||||||||||| ||||||||||| || || || || || | | || | ||
Sbjct 331311 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA 331370
Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385
|| || || | || || ||||| || |||||||| ||| | ||||| |||||| | |||
Sbjct 331371 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 331430
Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445
||||| || || || | || |||| | |||||| | | ||| | | |||||||
Sbjct 331431 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 331490
Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505
|| || | ||||||||||||| | | || || |||||||||||||| |||||||||
Sbjct 331491 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 331550
Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565
|| || || || | ||||||| || |||||| | |||| ||| ||||||||||| |
Sbjct 331551 TCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 331610
Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625
|| ||||||||||||||||| || || || ||||| |||||||| ||| ||||||||||
Sbjct 331611 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 331670
Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685
|| ||||||||||| || |||||||||||||| ||| | || ||||| ||||| || ||
Sbjct 331671 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGC 331730
Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745
|| || || ||| || ||||| || | || || ||| | | || || ||
Sbjct 331731 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 331790
Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805
|| ||||| ||||| || ||||||| |||||| ||||| ||||| || || ||
Sbjct 331791 ACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 331850
Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865
|| |||||||| |||||||| ||||| || | |||||||| |||||| |||||| ||
Sbjct 331851 ATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 331910
Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925
|| | | | || |||||||| || || | || || || | |||||||| |||||
Sbjct 331911 TCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 331970
Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985
| ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| |
Sbjct 331971 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 332030
Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045
|| | ||| || ||| ||| |||| ||||| |||| ||||| |||||||||
Sbjct 332031 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGT 332090
Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099
|||||||||||||| || ||||||||||| |||||||| || ||||| ||||||
Sbjct 332091 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 332144
Score = 569 bits (630), Expect = 2e-157
Identities = 701/954 (73%), Gaps = 3/954 (0%)
Strand=Plus/Minus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205
||||| |||||||||||||||| | ||||| || | | | || || | | |||
Sbjct 360576 TTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 360518
Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265
||||| | || || ||||| || || || || ||||| ||||||||||| ||||| ||
Sbjct 360517 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTT 360458
Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325
| ||||||||||| ||||||||||| || || || || || | | || | ||
Sbjct 360457 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCA 360398
Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385
|| || || | || || ||||| || |||||||| ||| | ||||| |||||| | |||
Sbjct 360397 GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 360338
Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445
||||| || || || | || |||| | |||||| | | ||| | | |||||||
Sbjct 360337 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 360278
Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505
|| || | ||||||||||||| | | || || |||||||||||||| ||||| |||
Sbjct 360277 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTG-ATAT 360219
Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565
|| || || || | ||||||| || |||||| | |||| ||| ||||||||||| |
Sbjct 360218 TCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 360159
Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625
|| ||||||||||||||||| || || || ||||| |||||||| ||| ||||||||||
Sbjct 360158 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 360099
Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685
|| ||||||||||| || |||||||||||||| ||| | || ||||| ||||| || ||
Sbjct 360098 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGC 360039
Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745
|| || || ||| || ||||| || | || || ||| | | || || ||
Sbjct 360038 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 359979
Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805
|| ||||| ||||| || ||||||| |||||| ||||| ||||| || || ||
Sbjct 359978 ACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 359919
Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865
|| |||||||| |||||||| ||||| || | |||||||| |||||| |||||| ||
Sbjct 359918 ATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 359859
Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925
|| | | | || |||||||| || || | || || || | |||||||| |||||
Sbjct 359858 TCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 359799
Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985
| ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| |
Sbjct 359798 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 359739
Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045
|| | ||| || ||| ||| |||| ||||| |||| ||||| |||||||||
Sbjct 359738 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGT 359679
Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099
|||||||||||||| || ||||||||||| |||||||| || ||||| ||||||
Sbjct 359678 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 359625
>seq7265
Length=2979
Score = 161 bits (178), Expect = 1e-34
Identities = 205/280 (73%), Gaps = 3/280 (1%)
Strand=Plus/Plus
Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354
||||||||| | || |||||||| || ||| | || || |||||| | | ||||||||
Sbjct 1958 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 2017
Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414
|| || | ||| ||||| || ||||| || ||||| || || || | ||||| |||||
Sbjct 2018 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 2077
Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAA-GAAGAAAGAACTTAGAA 19473
|||| || || || |||||| | | |||||| | ||||||| | | |
Sbjct 2078 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAAGAAACGATTGCTTA 2135
Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533
|||| || || |||||| |||||||| || ||||||||||| |||||||| ||||
Sbjct 2136 ATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTCCAA 2195
Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573
|||| ||| |||| ||||| |||||||||||| | || ||
Sbjct 2196 CAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 2235
>seq10972
Length=118478
Score = 158 bits (174), Expect = 1e-33
Identities = 206/283 (73%), Gaps = 8/283 (3%)
Strand=Plus/Plus
Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354
||||||||| | || |||||||| || ||| | || || |||||| | | ||||||||
Sbjct 45185 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 45244
Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414
|| || | ||| ||||| || ||||| || ||||| || || || | ||||| |||||
Sbjct 45245 AATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 45304
Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470
|||| || || || |||||| ||| |||| | | | || ||||| | |
Sbjct 45305 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 45360
Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530
||||| || || |||||| |||||||| || ||||||||||| |||||||| |
Sbjct 45361 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 45420
Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573
||||||| ||| |||| ||||| |||||||||||| | || ||
Sbjct 45421 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 45463
>seq6090
Length=481770
Score = 149 bits (164), Expect = 8e-31
Identities = 205/283 (72%), Gaps = 9/283 (3%)
Strand=Plus/Minus
Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354
||||||||| | || |||||||| || ||| | || || |||||| | | ||||||||
Sbjct 1106 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCCCATCAGAGCGTTTTCGTGGTCG 1047
Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414
|| || | ||| ||||| || || || || ||||| || || || | ||||| |||||
Sbjct 1046 AATCCATTTTGAATTTGATAAATG-ATTGCTTGTGAAGTATGCGTTCGGGTATGTCCTAT 988
Query 19415 CAATCTACCAGTGGTGGATTGGG----TGATGAACAAACAGACAAAGAAGAAAGAACTTA 19470
|||| || || || |||||| ||| |||| | | | || ||||| | |
Sbjct 987 AGATCTGCCTGTTGTTGATTGGAAATTTGA--AACAGATATTCGAA--AGAAACGATTGC 932
Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530
||||| || || |||||| |||||||| || ||||||||||| |||||||| |
Sbjct 931 TTAATTACAGTATTGATTTTGGAATTTGTATTTTTTGTGGTAACTGCGTTGAGTATTGTC 872
Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573
||||||| ||| |||| ||||| |||||||||||| | || ||
Sbjct 871 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTGCGAC 829
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 19383 GCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTGGTGGATTGGG----T 19438
|| ||||| || || || | ||||| ||||| |||| || || || |||||| |
Sbjct 34717 GCTTGTGAAGTATGCGTTCGGGTATGTCCTATAGATCTGCCTGTTGTTGATTGGAAATTT 34658
Query 19439 GATGAACAAACAGACAAAGAAGAAAGAACTTAGAAATTATTCGATAGACTTTGGAGCATG 19498
|| |||| | | | || ||||| | | ||||| || || |||||| ||
Sbjct 34657 GA--AACAGATATTCGAA--AGAAACGATTGCTTAATTACAGTATTGATTTTGGAATTTG 34602
Query 19499 TATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTATCCATGACAGAAGA 19558
|||||| || ||||||||||| |||||||| |||||||| ||| |||| ||||| |||||
Sbjct 34601 TATTTTTTGTGGTAACTGCGTTGAGTATTGTCCAACAAATTGTTTATCAATGACTGAAGA 34542
Query 19559 ATATGAATTGGCTAC 19573
||||||| | || ||
Sbjct 34541 ATATGAACTTGCGAC 34527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603381886012800
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