Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7271 93.3 3e-14 seq3221 89.7 4e-13 seq13804 86.0 4e-12 seq5889 82.4 5e-11 seq1028 82.4 5e-11 >seq7271 Length=339586 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||||||||| || ||||| ||| ||| || | || || || ||| | Sbjct 98391 AATGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGAAGTTGAGAGCTC 98450 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || ||||| |||||| ||||| ||||| ||||| | || || Sbjct 98451 CGACACCATTGACAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGAC 98508 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 |||||| || | || |||||||| |||||| | || || | ||||| |||| | || || Sbjct 98509 CAGCAAAGGCTCATCTTTGCCGGTAAACAACTAGAGGATGGACGCACACTTG-CAGACTA 98567 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||| || || || | |||||||| Sbjct 98568 CAACATCCAGAAGGAATCAACCCTTCATTTGGT 98600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| || ||| || | || || |||||| | Sbjct 55907 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 55966 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || || ||||| || || | || || | Sbjct 55967 GACACGATCGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATC 56024 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || ||||||| |||||||| |||||| | || || | || | |||| | || ||| Sbjct 56025 AACAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTG-CTGACTAC 56083 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| || | |||||||| | ||| | ||||| ||| Sbjct 56084 AACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGC 56134 >seq3221 Length=646307 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||||||||| || || || || || || | || || || ||| Sbjct 212074 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 212015 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| ||||| || || ||||| || || ||||| Sbjct 212014 TCCGAC-----ACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGC 211960 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| || | || ||||| || || ||| | || |||| |||| ||| ||| Sbjct 211959 CGGACCAGCAGCGTCTCATCTTTGCAGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCG 211900 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCAT 27993 |||||||||| |||||||| |||||||||| Sbjct 211899 ATTACAACATTCAAAAAGAATCCACTTTGCAT 211868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || ||||| ||| |||||| | || ||||| ||| || Sbjct 291264 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 291205 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || | || ||| | Sbjct 291204 GACACCATCGACAAT--GTCAAGGCGAAGATTCAAGACAAGGAGGGAATCCCCCCGGACC 291147 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || ||||| || | || |||| |||| |||| ||||||||| Sbjct 291146 AGCAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACA 291087 Query 27968 ACATCCAAAAAGAG 27981 |||| || || ||| Sbjct 291086 ACATACAGAAGGAG 291073 >seq13804 Length=830140 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||| | || || || || || | || || || ||| || Sbjct 395586 ATGCAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGAGAGCTCC 395645 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| || || ||||| ||||| |||| ||| | Sbjct 395646 GACACGATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCGGACC 395703 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || || |||||||| || | || |||| |||| |||| | ||||||| Sbjct 395704 AGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACA 395763 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | || | || | ||| | || |||||| Sbjct 395764 ACATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGC 395813 >seq5889 Length=513596 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || || ||||| | || ||||| ||| || Sbjct 196662 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCC 196721 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| | || ||| | Sbjct 196722 GACACCATCGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGACC 196779 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||||||||| | || |||| |||| |||| ||||||||| Sbjct 196780 AGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA 196839 Query 27968 ACATCCAAAAAGA 27980 | |||||||| || Sbjct 196840 ATATCCAAAAGGA 196852 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || || ||||| | || || || ||| || Sbjct 196890 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCC 196949 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| || || ||||| ||||| ||||| ||| | Sbjct 196950 GACACGATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACC 197007 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || ||||| ||| | || |||| |||| |||| | ||||||| Sbjct 197008 AGCAGAGGCTGATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACA 197067 Query 27968 ACATCCAAAAAGA 27980 ||||||| || || Sbjct 197068 ACATCCAGAAGGA 197080 >seq1028 Length=430 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || ||||| ||||| | || ||||| ||| || Sbjct 151 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 210 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || || || || ||||| || || | || || | Sbjct 211 GACACGATCGATAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACC 268 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| ||| | || |||| |||| |||| ||||||||| Sbjct 269 AGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGCACCTTGGCCGATTACA 328 Query 27968 ACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||||||||||| ||| |||||| Sbjct 329 ACATCCAAAAAGAATCCACCTTGCAT 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355797712556205