Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13803 107 2e-18 seq7271 96.9 3e-15 seq3221 95.1 1e-14 seq13804 93.3 4e-14 >seq13803 Length=1821802 Score = 107 bits (118), Expect = 2e-18 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || ||||| || ||||| | ||||| |||| || Sbjct 337614 CACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTC 337555 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || || |||||||||| ||||||| | | ||| |||||| Sbjct 337554 GAGCTGCTTGCCTGCGAAGATGAGGCGCTGCTGGTCCGGTGGG-ATACCCTCCTTGTCCT 337496 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| |||| ||| | | | || ||| |||||||| |||| ||| || | Sbjct 337495 GGATCTTCGCCTTGA-CGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTC 337437 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| || ||||| |||||||| Sbjct 337436 TTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 337402 >seq7271 Length=339586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || ||||||||||| ||||| || | || ||| Sbjct 94731 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCA 94672 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| ||||| | |||||| || ||||| | || || |||||| Sbjct 94671 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCT-TCCTTGTCCTG 94613 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | |||||| || || || | || || |||| Sbjct 94612 GATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTT 94553 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| || || || || |||||||||||||||| Sbjct 94552 TCCGGTGAGAGTCTTCACAAAGATTTGCATCT 94521 >seq3221 Length=646307 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| ||| || || ||| || || || || ||||| ||||| || | | | Sbjct 211629 CGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCCA 211688 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || ||||| || || |||||||| || |||||| | || || || Sbjct 211689 TCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCT-TCCTT 211747 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTCGACTCCACGTCCACCG 39244 |||| |||||| |||| ||| | || | | || |||| || || |||| | Sbjct 211748 GTCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TCGACTTCCAGAG 211803 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| | ||||||||||| ||||| || ||||| ||||| Sbjct 211804 TGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 211843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || || |||||||| | || || |||| || || || || || ||||| Sbjct 211881 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCTGCAAAG 211940 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | ||| |||||| ||| || |||| ||| Sbjct 211941 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 211999 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| |||||| || | ||||| | || || || || ||||| || Sbjct 212000 GTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCAC 212059 Query 39273 AAAGATTTGCATCTTTAC 39290 ||| || |||||||| || Sbjct 212060 AAATATCTGCATCTTCAC 212077 >seq13804 Length=830140 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| ||||| | || |||||| || || || || ||||||||||| Sbjct 396040 CCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCC 395981 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| ||||| || || || || | ||||||||| | ||| Sbjct 395980 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 395921 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | || |||||| ||| ||| || | ||| | | | || ||| |||||| Sbjct 395920 ATCCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCGGAGCTCTCCAC 395862 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 395861 CTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 395814 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || |||||||| || || || | || || ||||| Sbjct 396244 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGC 396185 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || | ||||||||||| | || | | |||||||||| ||| || Sbjct 396184 TTGCCGGCGAAGATCAACCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATCTTG 396125 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | ||| ||| |||||| |||| ||||| | || || || Sbjct 396124 GCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGT 396066 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| || || ||||| ||||| Sbjct 396065 CAACGTCTTGACGAAGATCTGCAT 396042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429467518677395